Basic Information

Insect: Penthetria funebris
Gene Symbol: -
Assembly: GCA_027564355.1
Location: JANSTX010024326.1:1811-12691[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.5e-06 0.00059 20.1 4.3 1 23 211 234 211 234 0.97

2 8 5.8 3.6e+02 1.8 0.5 2 9 283 290 282 297 0.87

3 8 3e-05 0.0019 18.5 1.1 1 23 447 470 447 470 0.98

4 8 9.4e-06 0.00058 20.1 2.2 1 23 484 506 484 506 0.99

5 8 0.00038 0.023 15.0 2.2 1 23 512 534 512 534 0.97

6 8 2.2e-05 0.0014 18.9 1.3 1 23 540 562 540 562 0.96

7 8 0.00023 0.015 15.7 0.1 1 23 568 590 568 590 0.99

8 8 0.068 4.2 7.9 2.5 1 23 598 620 598 620 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.5e-06	0.00059	20.1	4.3	1	23	211	234	211	234	0.97
2	8	5.8	3.6e+02	1.8	0.5	2	9	283	290	282	297	0.87
3	8	3e-05	0.0019	18.5	1.1	1	23	447	470	447	470	0.98
4	8	9.4e-06	0.00058	20.1	2.2	1	23	484	506	484	506	0.99
5	8	0.00038	0.023	15.0	2.2	1	23	512	534	512	534	0.97
6	8	2.2e-05	0.0014	18.9	1.3	1	23	540	562	540	562	0.96
7	8	0.00023	0.015	15.7	0.1	1	23	568	590	568	590	0.99
8	8	0.068	4.2	7.9	2.5	1	23	598	620	598	620	0.98

Sequence Information

Coding Sequence: ATGGATATTAAAGTTCAGGACTATAACTCTATATGTCGACTCTGTTTGAAACATGAAAATGAATTAATTTCGATATTTCAGTTAAAGAATAAACATTTAACATATAGTATTCAAGATATGATAAAAGTAATTTCAGGATTAGAGATAAACAACAGTGATGAACTACCATCCTCAATTTGTACCAATTGTCAAGATAGTCTCATTGCGTCTACTGTATTTCGAAAACAATGTATAACGTCAAATGAATATTTATTAAGAATTAAATTTGAATATACGAGGAATAATGAATTGAATAATGACCATTCTGAATATGATGAAGACGATGTAAAGCCGGTTGTAAACAATTTACCATCTGTAATAATTTCGAATGAATTTGGAAATATTGCTGATGTCAATAAGAATGATATAACAATAAAAAATGAAAAGTCTGATTCAATAATAGAAATGAATATTAGTGCAAATAGTGTCGATGTTAAAGCGAAAACAACTAAGAAGAACAGATTACCGACAAAAAAAGTGAAGATTAAAAAAATTCGCAAAATGCCCAGTGGAATTTGTCACATATGTGGAGAATATCGTATTAATTTACCAAGTCATGTATTTATTATTCATAGCAATGTGCCTGTTTCATTTACATGCGATATATGTCAGAAGGTGTTTAAGAATCATAAATATATAAAAAGACATATGAGATATGTACATATAAATGAAAGATTATGTTTAAAATATGGACCATATTTAGAGCCAATATATGGTGTTGATAATAATAATACCGAAATTGCAGTTATGATAAAGCATAATTTAGGAATTGAGGTACTTGCCGATGACGAAAAATTACCACTATTAATTTGTAATCATTGTCAAAAAACGCTTGTGATATGTAATTTATTTAGAGGACAATGTCTGAAATCTAATTCACAACTATTAAAGTATATACAATTCGAATCAGAAAATCATTTAATAGCAAACGGATTACAAACGGTACAACTAAATATAGAAAGTTTGGAATATGAAAACGAAGAAAATATTAAAATATTTAAGAAAGAAGTTTCTGAAAATGTTACAGAAGAAATGCATCTAATTAAATTAGAAATTGATAAGGAAGATCATACGAATAAAGACTATACAAGTACAAATAATATGAAATTATCCAAAAATAAATTAAATAGAAAAATAAAAAGGGATTCTGATAAAAATGATAAAGACAAACAGAATGATAAAGTTAATATACCAAGAATACGTAAGAATCCCAGTGGCGTTTGTCACATTTGTGGTGTCTATCGTATTAATTTACCATGTCATATGATTAGTCATGATGAACAAAAATCAAAAGTACAATTTAAATGTGAACTATGTAATAAATATTTTAATAGTATCTATAATTTAAGGGGACATATTAAATCAATTCATATAAATGAAAGAAAATTATTATTTATTTATTTTAGAAATTATAAATGTGACTTATGTACACAAGCTTTTAATAAAAAATATTTACTACGAAAACACTTACTAACGCATTCTGGTGAGCGAAATTTTAAATGTAACTATTGTGATAAAAGATTTACTGTAGCTGCCACACGTAACGATCACCATTTAATACATACACAAGAAAGACAATTTCAATGTGAATTTTGCAGTAAAACATTTGCACGAAAAAATACACTCAAAAGTCATGTGGGAATTCATACTGGTGAACGACCATTTAAATGTGGCATATGTCCAATGGATTTTGTGAATTCATCAAGCGCTGCCGTTCATCGGCGTATCCATAAAAAAGATGATGCTACACCGTACAAGTGTAGTACATGCAAAATGGAATTCAGTTTTAGGAATATTTACAATGCTCATGTTAAAAAACATTTAATAGATAAATTATCCGAAGAATGTGTCAGTAAATAA
Protein Sequence: MDIKVQDYNSICRLCLKHENELISIFQLKNKHLTYSIQDMIKVISGLEINNSDELPSSICTNCQDSLIASTVFRKQCITSNEYLLRIKFEYTRNNELNNDHSEYDEDDVKPVVNNLPSVIISNEFGNIADVNKNDITIKNEKSDSIIEMNISANSVDVKAKTTKKNRLPTKKVKIKKIRKMPSGICHICGEYRINLPSHVFIIHSNVPVSFTCDICQKVFKNHKYIKRHMRYVHINERLCLKYGPYLEPIYGVDNNNTEIAVMIKHNLGIEVLADDEKLPLLICNHCQKTLVICNLFRGQCLKSNSQLLKYIQFESENHLIANGLQTVQLNIESLEYENEENIKIFKKEVSENVTEEMHLIKLEIDKEDHTNKDYTSTNNMKLSKNKLNRKIKRDSDKNDKDKQNDKVNIPRIRKNPSGVCHICGVYRINLPCHMISHDEQKSKVQFKCELCNKYFNSIYNLRGHIKSIHINERKLLFIYFRNYKCDLCTQAFNKKYLLRKHLLTHSGERNFKCNYCDKRFTVAATRNDHHLIHTQERQFQCEFCSKTFARKNTLKSHVGIHTGERPFKCGICPMDFVNSSSAAVHRRIHKKDDATPYKCSTCKMEFSFRNIYNAHVKKHLIDKLSEECVSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -