Pfun004132.2
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- L
- Assembly
- GCA_027564355.1
- Location
- JANSTX010057334.1:2077-8689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.56 35 5.0 5.8 1 23 3 25 3 25 0.98 2 13 2.9e-07 1.8e-05 24.8 3.1 1 23 31 53 31 53 0.99 3 13 1.3e-05 0.00083 19.6 0.3 1 23 59 81 59 81 0.98 4 13 0.13 7.8 7.1 0.4 1 23 440 462 440 462 0.95 5 13 0.0075 0.47 10.9 1.1 1 23 527 549 527 549 0.98 6 13 8.4e-05 0.0052 17.1 1.8 1 23 557 581 557 581 0.91 7 13 2.1 1.3e+02 3.2 0.1 1 23 586 609 586 609 0.88 8 13 0.00028 0.018 15.4 1.1 1 23 704 726 704 727 0.96 9 13 0.0033 0.21 12.0 0.6 2 23 1110 1132 1109 1132 0.95 10 13 0.0039 0.24 11.8 0.1 1 23 1138 1160 1138 1160 0.98 11 13 0.075 4.7 7.8 0.5 2 23 1299 1320 1298 1320 0.96 12 13 0.0003 0.018 15.3 0.1 1 23 1330 1352 1330 1352 0.98 13 13 0.0019 0.12 12.8 0.5 1 23 1359 1381 1359 1381 0.97
Sequence Information
- Coding Sequence
- ATGCCATTTAAATGTGATTACTGTGCACGTTTGTTTAAACATAAAAGGTCAAGGGATCGACATACCAAGTTGCATACAGGAGATAGACGATATCGTTGCCCTCATTGTGAAGCCGCATTTTCAAGAAGTGATCATTTAAAAATTCACATGAAAACACATGATAATCAAAAACCATTCCAATGCACAATTTGTAATCGTGGTTATAATACAGCCGCAGCACTAACATCACATATGCAAAATCATAAGAAACAAGCAGCACTTTTGGGAACAACTAATTTAAATTATAGTCCACGTTCAACTGGTTCAGGTTCGAGTAGTACGAGTAGTAATTTACAAAAACGGAAATATAATTCAATTGACAATCAACAATCGGCATACCAAAATTCATCCGAATTCAATACAAATGCTAAAAGAACtgcaaatatcagtgcggctattacaacaattgcatccaataataataataataatattaataacaataataataatagtttaataaataataacaataatatattgtACTGTATTTATTGTACAAAATCAGATTTTCAAAGTATGGACCAAGTACATGGACACATTCAGGATAAGCATGCGGCTACAGTACGGGAGAATTTACCACCATATCTAAATAATAGTTTACAATTATGTTGTGAATTTTGTACCATGAAATTCCCTTCAATACAAATAATGTTTCATCATATACGTACAACACACATAAATCAAATAAATAGTCCAAATTCGTATATGAATCAATTTAAAAAATTGAATAATTATGGAAGTATGGAAGGAGCACATCTAATTGGAACTGTACCAGAGTCAAATGGTACAAATACAAATATTGAGGATCCATTATTACATAATGTTTACAGTATCAATAATAATAATAATAATATTAATAATACAAATAATAATAATAATATAAACAATAAATGTGTTATAAAACCAGAACAATCAAGTCCAATACAATTAGAAATTAAAAGAGAAAATTTTAAAATAGAAAATATTAAAGAGGAACAAACAGAAAATGAAGAACAACAGTCACAGGAACAAGAAAGCCCAACTGATTTAAGTAAAAAATCAATAAATAACGATGATGTGCTATCAAATCATAGTGTAGAAACAAAACAAACTACACCACCTTTACAACTACCATTAACATTGTCAAAATCACCAATACAAAATACTAAACAAATACAAGAAATCGTCCATCAATCTCAACAACAACTTCAGTTGCAATCACAATCACAACAACCATCACCACGACCTCAGCCACAACAACAACGACCACTTGCACAACATTCACCAATTGGAAATTTTTTATGCAATCAATGTAATGCTGCATTACCAGATTTTGAatcatttcgtaatcatttaaaaaatcatttaacccatcaacaacttcagcaccagcatcatcatcatcaacatcaacatcaacatcaacatcaacatcaacatcaacaacaacaacaacaacaacaacaacaacagcagcaacaacaacagcagcaacaacaacaacagcaacaacatcaccacttacatctgcccaatggcaataatatgaatattagttatgtatgtcaacattgtggtatgcaattaGCAAATCAATTAGACTTTGAACAACATTATAATTCACATTTTCTCATAACAATAACAGAATACATTTGTAAATTCAATTGTAACAAAACATTTACAAAATCAGATGATTTACAAAAGCATTTATTTGACGTTCATTCAATGAATGTATATAAATGTAATATTTGCATGGAATTATTTGAAACGAAAGTTGCAATTCAACTACATTTTGCAGTAAATCATTCAAATGAAATAAAAATGTATCGTTGTTCGGCCTGTATGGAATTATTTAAATTGGAAAAAGATTTTAAgtatcacataaaaacaagacatcatcaaattattccatcaacaactgcaaattgtattccaccatcatcaacattatctacatcattgtcaacatcatcatcatcagcatcaacgacaacatcatcatcgacaacaattcaatgtctattttgtcgtACAATTTGTGCATCTGAATTGGAAATGCATTTTCATTTAGCCGCACATGCACGTCAATATCGTTGTCCAATTTGTCCCGAATCATTTCATGTTGAATTTTTATTAGATAGACATATACAAATACATCATACACAAAAAGATTTACAAGGTATTGTTACTGGTAATATTAGCACTGGCAATACAAATTCAGCTAATGCTGGAATTATTGGAACTGGCGTCGGCACAACTAATAATCCAAATATCGGTCATCCTAGTAATTATCATTATAAATCAACAATAACAGTTAATAATAATAATAGTATTTTAGATTATCATTCGATagctacagctgcagcagctgcagctgttgttgctgGCAACAAAAATCTATTTAATTTTAGTGATAATAAATTTTATAATCCATTACAAATTGATGCATCACCACGATTGATTGCCAATAAGAATTTATCCGCAATGTATTCGTATTATGATGGTttaacgaaaaataattgtttaactaatagtaataatagtagtattagtaatagcagcaatagtaataacaataataatagatatggtctagcaacagaagctgcaattgatgtaaataaaaatttattaggattatataataatgatttagcaacaaaaatgtatggtggtggtctgtcttcatcatcaacatcatcatcatcagcagcagcagctgcatcagttgcagtggatacaattaatcgtggaactggattaggaattgttaacagtgtcgacattaatagcaatgttcatagtaataatattattaccggattaaGAAATGATAGGGATTTATATTCAACACCATTAATAGATGCAACAACTAAACCGAATAGTTATTTTCTTGGTAATAATTTAATAAATTCTAGAATTTGTGCTAAAAATTTAGAAACTAATAAAATTAGAGGATCGTCAACAACTCCAATAAGTGAATATCATTCAAATCAGAAGGATATAGTAACATCCCAAGAATCTGTAaaaaataatattgccagattttcgggaagtaacaataataatagtaataatagtaataataataataacaataataataataataacaataataataatattaataataataataataatagtggtaataataatgtcgtatctaatgtgaacattagtaatagtagtacaaatggtgcgtttaattgtggcaTCTGTGAACGAAATGATTTTCTCACTGAAATGGAAATGTATACACATAGAAAAGTGTCACATAATGTCAAAACTGGCGTTAGTCTAAGATGTGCCTATTGCAATGGAAATTATCGATCAAGAAATGAATTAGAGAATCATATGAAATTACAACATAATACAACTGGAAAACATAAGTGCTTAATATGTGATGAAATATTTCCATCGCCAGCCGTTTTGGCTGAACATAAACTAACCCATTCAAAAGTTGGTCCATCAGGAAAATGTTCACATTGTCCAACCATTTTAAAGGATGTACTAATTTTTAAATCTCATATGGCTGAACATGTAAGCATGGAAATTCCTGTACAATGTATATGTTGTAGACAAACATTAAATTCTGAGTTTGAAATTGGATTACACGCAAAATTTCATACCAAATCTTCTGAGTCTAATGAAAAAACATGTGCCTTGTGTTTAATTTCCATGCCAAATAATACGGATGCAAAAATATGCGAAAAATGTATTAAAAAGCATAATTTCACAGGAAAATTTATAAGTAATAATTTTCAAAATACTGTAAAATCTGATCAACAATCTCAAACACAATGTCAGCAACAGCAACAGCAACATCATCAATTGAAAATAAATTATTCAGACCAATTAATTGAATCAAAATGTCAAATATGTAAAAAATATTTAATTTCTAAACAGAAACTTGTTGAACATTTAATTGAACATTCCTATCAAGGTTGCAATGAAAATGGTTATTCTTGTTATATTTGTGCAGCTGTTTTTACAACATCATCCGGATTACAAGGTCACATGAATGAACATGGTCCAAATTCACGTCCATATGATTGTAATATATGTACGATGAAATTTTTCTTTCGTGCTGAATTGGAAAATCATTTAATGGAACATGAAATTGGTGGCATTCTTATGCCATCAACGGCAAACACAAATATTAATGATGGTAATTTTGAAAATGAACCAATAAATTTTGTACGAACTGCATATAGTAGTAATAATGAAGATAATACTGTGATGGCTGGTTGTCGAAATGCCAGTCAAAATAGTAATGATAATATTAAAAAGGAAAATAATCAACATGAAGATGATGATGAATATATTGAAGTTGAAAAAACCATACAAAATGAACAGGAACCATCTCTTAGAAAAGATGATAAAGATCATAATGATGATGAGAATTTTAAATAG
- Protein Sequence
- MPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLGTTNLNYSPRSTGSGSSSTSSNLQKRKYNSIDNQQSAYQNSSEFNTNAKRTANISAAITTIASNNNNNNINNNNNNSLINNNNNILYCIYCTKSDFQSMDQVHGHIQDKHAATVRENLPPYLNNSLQLCCEFCTMKFPSIQIMFHHIRTTHINQINSPNSYMNQFKKLNNYGSMEGAHLIGTVPESNGTNTNIEDPLLHNVYSINNNNNNINNTNNNNNINNKCVIKPEQSSPIQLEIKRENFKIENIKEEQTENEEQQSQEQESPTDLSKKSINNDDVLSNHSVETKQTTPPLQLPLTLSKSPIQNTKQIQEIVHQSQQQLQLQSQSQQPSPRPQPQQQRPLAQHSPIGNFLCNQCNAALPDFESFRNHLKNHLTHQQLQHQHHHHQHQHQHQHQHQHQQQQQQQQQQQQQQQQQQQQQQQQHHHLHLPNGNNMNISYVCQHCGMQLANQLDFEQHYNSHFLITITEYICKFNCNKTFTKSDDLQKHLFDVHSMNVYKCNICMELFETKVAIQLHFAVNHSNEIKMYRCSACMELFKLEKDFKYHIKTRHHQIIPSTTANCIPPSSTLSTSLSTSSSSASTTTSSSTTIQCLFCRTICASELEMHFHLAAHARQYRCPICPESFHVEFLLDRHIQIHHTQKDLQGIVTGNISTGNTNSANAGIIGTGVGTTNNPNIGHPSNYHYKSTITVNNNNSILDYHSIATAAAAAAVVAGNKNLFNFSDNKFYNPLQIDASPRLIANKNLSAMYSYYDGLTKNNCLTNSNNSSISNSSNSNNNNNRYGLATEAAIDVNKNLLGLYNNDLATKMYGGGLSSSSTSSSSAAAAASVAVDTINRGTGLGIVNSVDINSNVHSNNIITGLRNDRDLYSTPLIDATTKPNSYFLGNNLINSRICAKNLETNKIRGSSTTPISEYHSNQKDIVTSQESVKNNIARFSGSNNNNSNNSNNNNNNNNNNNNNNNINNNNNNSGNNNVVSNVNISNSSTNGAFNCGICERNDFLTEMEMYTHRKVSHNVKTGVSLRCAYCNGNYRSRNELENHMKLQHNTTGKHKCLICDEIFPSPAVLAEHKLTHSKVGPSGKCSHCPTILKDVLIFKSHMAEHVSMEIPVQCICCRQTLNSEFEIGLHAKFHTKSSESNEKTCALCLISMPNNTDAKICEKCIKKHNFTGKFISNNFQNTVKSDQQSQTQCQQQQQQHHQLKINYSDQLIESKCQICKKYLISKQKLVEHLIEHSYQGCNENGYSCYICAAVFTTSSGLQGHMNEHGPNSRPYDCNICTMKFFFRAELENHLMEHEIGGILMPSTANTNINDGNFENEPINFVRTAYSSNNEDNTVMAGCRNASQNSNDNIKKENNQHEDDDEYIEVEKTIQNEQEPSLRKDDKDHNDDENFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -