Pfun003670.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- hang
- Assembly
- GCA_027564355.1
- Location
- JANSTX010006009.1:1-5537[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00026 0.016 15.5 1.1 2 23 42 64 42 64 0.96 2 14 0.059 3.7 8.1 0.1 6 22 143 159 143 159 0.97 3 14 0.11 6.7 7.3 0.8 3 21 169 187 168 188 0.95 4 14 0.054 3.3 8.2 0.6 3 23 232 253 230 253 0.93 5 14 0.17 10 6.7 0.2 2 23 293 315 292 315 0.88 6 14 0.0072 0.45 11.0 1.0 3 23 388 409 386 409 0.93 7 14 1.5e-05 0.00094 19.4 0.4 1 23 417 440 417 440 0.97 8 14 0.02 1.2 9.6 0.2 1 23 452 475 452 475 0.96 9 14 0.21 13 6.4 0.7 1 23 478 500 478 500 0.96 10 14 0.00047 0.029 14.7 0.8 1 23 507 530 507 530 0.96 11 14 0.00015 0.0094 16.3 0.7 2 23 660 681 660 681 0.98 12 14 0.18 11 6.6 3.5 2 23 727 749 726 749 0.93 13 14 0.0071 0.44 11.0 0.3 2 23 758 780 757 780 0.95 14 14 0.00011 0.0067 16.7 0.5 2 23 851 873 850 873 0.94
Sequence Information
- Coding Sequence
- AGTACCGAATTGGGCAATGAACAAGATTCAACAATGCAAACAGATGATCAAGACGATGAATCACTATTATTTGCATCACCACAATTAAATAGTGATGGACGTATAATGCCATCACGGCCACCAACTTGTACAATATGTAATATGAAATTTTCAAATAGAGCAAATGCAAGACGACATGAACGTAATATTCATGGACAAGTATTGAATCCAATGAATTCGGGTCAGGTATCAATAACAGCACCGTTACGTATACAATCGACACCGATACGACCAAGACCATTGCAACGCCATCAACGTCCGCCACCAATTGTCTTTGACTATACAAAACCGGAATTGTATCGTCAATTTTTAACCGATTCAAAATTATATTTTATCAAACGTCATTTAGAATTTCTCGATCAATATCAAAATATGAAATGTATTTGTTGTGACAAAGAATTTCCATCATATAAATTATTTATGGCACATATGCGTAAAAAATATAGTACATTATCGAGAAATTTATGTTTTAAATGTTTAAAACAATTTCAAAGTAAAGCCCAATTTATTGCCCATTTAAAAAAACGGAATTGCCTTAatttatataaagtttatttggccgatgataccgtttcaaaatcaccattaccaccgccaccacAAGCAAATCGTATGGGTGGTACAAAAGAAATCATTTCAAATAAGGTATACGGTTGTAAATTATGTACAAAAACATTCCGTTTGAAATTAGATTTTCGTGGACATGTTAATGAGGCCCATGGTGATGATCAAAAAACAAGTTTACCCGGTTCGGCATGTAATTTTTGTGATGCCGAATTTGAAGATCCACAAGTTAAACGACGTCACTGTAATAATATGGAATGTATTGTCTTTTTAATTTGTGGTACATGTGATGAACAATTTGAAAATCACGCATCTTATATTGAACATGTGTATGCAAATCATTTACAATCAACAAATATAACAATATCAACACCATCCCAACAACAACAACAAACGATAAAAATTGAACAATCACCTGAAATTGATCAAATAATAAATGATGATGATAATCAACAACGTCGTCAACATCGTTTATCAAATGATGATACATTTTTAAATAGTTCTGAAGATTTTGATATTTATTCACCATCACAAACAAGTTTACGTAATCCACAAAATTGTAAAGTTTGTTTTAAACAATACAATAATTATTATAATGTTTTACGGCATATGGAGGCAAAACATCCGGATCAATTACCAGCAACATATCGTTGTGAAGGTTGTGACGTTGGTTACCCACGTCAATCTGAATTACGTGAACATATGCATAAAGTACATGGTGAAACATTACCGAAAACAAAACGTGAATTTTTCAATTGTCGTATTTGTTTTGCCGTTTTTGATAATAAAGAATTATGGCTCGATCATCAAGCAACAAATCATTCAAGATTTTTTTGCAATCAATGTGATTTTGAAACAGATATTAAGGATGAATTTGAACAACATTTATTACAACATATACAACGTAGTAAATTATTTACGTGTACCGTTTGTCAACATTCATTTAATTCGGAACGTGGTCTTGAAACACATTTGGCTGTTATGCATGGATTGAAAAAGGAACAAATGCCACCGCCACAACAGCAACAACAACTACAATTAGAAGATTGTGATGACGAACAAATGATGGATGATTATAATAATACTGGTTTAATTGATAGTGAAATTGCTGAAGATGGTGAAATTTTAAATTCAAGTATGAATAATAAAATAAATCTATTAATAAATGGTAGTTTAAAACTacgcgaaaataatgcgaatcatattaacaatgataataatggtatgttagaatataatgatgatgacgattataatggtaatttaaataataatgaaacattgctggtacagcaacaacaacaTCATTCAACAGTGCCACCATCGAAAAGAATTAAAATTGAAAAACAAGAAATTAATGAAGATAAAGCTAGAACATGTCCAATTTGTCATGTTATATTTAATAATGGTATATCATTGTCAAATCATATGCGTACACATTCAATtagtaatagtaatagcagtaatcatagtttaattattaataatagtagaagtaatagtaattcagttccactatcaataTCAAGTTATTCACATCCAACATCACAACATGGTCATGTTAGTAATCGTATGAGATGTCGTATTTGTCAAAAACGTATACATACAAAACAGGGTTATAAAAGGCATATGTTTAATGTTCATCAAGTACGTGATTGTGTATTTATTAAGTGTAGATTATGTCCGGCTGAATTTAGCAATGATAAAGGTTTAAAGGTACATATGTTTAGAACGCATAATATTTCGgtgcaacaaattcaacaaaatgaacaacgtttggcaaaagctgcggcagcagctgctgctgctgcagcagctactgcatcggccatatcagcatccagtggtttatctttAATGCAACACACAAAACAAGAATTAAATGAAACACttataaagaaacatcaattgcaacagcagcagcaacaacGAGCCCAAATCATTGTCGAATGCGATATCTGTCATACTGTATATAGAAATCGTGAACAATTAAAAGCCCATAAAAGTATTGTGCACGGCGTTGAAAGGTGA
- Protein Sequence
- STELGNEQDSTMQTDDQDDESLLFASPQLNSDGRIMPSRPPTCTICNMKFSNRANARRHERNIHGQVLNPMNSGQVSITAPLRIQSTPIRPRPLQRHQRPPPIVFDYTKPELYRQFLTDSKLYFIKRHLEFLDQYQNMKCICCDKEFPSYKLFMAHMRKKYSTLSRNLCFKCLKQFQSKAQFIAHLKKRNCLNLYKVYLADDTVSKSPLPPPPQANRMGGTKEIISNKVYGCKLCTKTFRLKLDFRGHVNEAHGDDQKTSLPGSACNFCDAEFEDPQVKRRHCNNMECIVFLICGTCDEQFENHASYIEHVYANHLQSTNITISTPSQQQQQTIKIEQSPEIDQIINDDDNQQRRQHRLSNDDTFLNSSEDFDIYSPSQTSLRNPQNCKVCFKQYNNYYNVLRHMEAKHPDQLPATYRCEGCDVGYPRQSELREHMHKVHGETLPKTKREFFNCRICFAVFDNKELWLDHQATNHSRFFCNQCDFETDIKDEFEQHLLQHIQRSKLFTCTVCQHSFNSERGLETHLAVMHGLKKEQMPPPQQQQQLQLEDCDDEQMMDDYNNTGLIDSEIAEDGEILNSSMNNKINLLINGSLKLRENNANHINNDNNGMLEYNDDDDYNGNLNNNETLLVQQQQHHSTVPPSKRIKIEKQEINEDKARTCPICHVIFNNGISLSNHMRTHSISNSNSSNHSLIINNSRSNSNSVPLSISSYSHPTSQHGHVSNRMRCRICQKRIHTKQGYKRHMFNVHQVRDCVFIKCRLCPAEFSNDKGLKVHMFRTHNISVQQIQQNEQRLAKAAAAAAAAAAATASAISASSGLSLMQHTKQELNETLIKKHQLQQQQQQRAQIIVECDICHTVYRNREQLKAHKSIVHGVER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -