Pfun010425.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- -
- Assembly
- GCA_027564355.1
- Location
- JANSTX010002595.1:502-6960[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0091 0.57 10.7 0.2 1 23 568 591 568 591 0.94 2 13 0.21 13 6.4 0.2 1 23 687 709 687 709 0.94 3 13 1.7e-05 0.0011 19.2 1.6 2 23 712 733 712 733 0.97 4 13 0.00013 0.0083 16.4 2.8 1 23 739 761 739 761 0.97 5 13 0.0004 0.025 14.9 7.1 2 23 768 789 767 790 0.94 6 13 2.9 1.8e+02 2.8 0.3 6 23 804 821 802 821 0.96 7 13 0.01 0.65 10.5 5.3 3 23 828 849 826 849 0.95 8 13 0.02 1.3 9.6 0.5 3 23 863 882 862 882 0.97 9 13 1.1e-05 0.00069 19.8 2.0 1 20 892 911 892 914 0.93 10 13 5.1e-05 0.0032 17.7 0.2 1 23 922 944 922 944 0.99 11 13 0.0049 0.3 11.5 7.7 1 23 950 972 950 972 0.98 12 13 6.2e-05 0.0038 17.5 4.9 1 23 978 1000 978 1000 0.99 13 13 0.0024 0.15 12.5 4.2 1 23 1006 1028 1006 1029 0.96
Sequence Information
- Coding Sequence
- ATAAATGAAACAACAGTCGCCACCGAAACAGACGAGAATATAAATAACTCAAAGGTAAATCAGAATAAAAAACCAGTCAATGCTGATGTTGAAGCTGTACGTAAAACGGGCATTGAACAAACAACAAAATCTTCCTTGAGTGATTTACAATCAAATTGTAATGAAATTGAATCAATATTATCAGTATCAACAGAAAAATGTACTAGTGCGGCAACAAGTGTTATTCGTATGATATCACCGCAACCTGCATTGAGAACAGAATTAGTAAATGTTAGGTCATTAATAAAGACACCATATAAGAAAGTTCCAAAAAAAATTGTAGTTAAATTTATTAAACCATTTATACCCGCTCAGGAAGAAGAGATAAATATACTACCACCCGTTAAACATCTTTCAAATACTGATCAAGTACGATTAAAGCAAGAAATTGTTGATGATAATGAATCGAAGAAAAATATTCAAAATGAGATACTATCTCAGTTTGATTTTCCATTCAGTCCTTTAAGACAATCTTTTACTCCAGTTCCTTCATTAATAAATAACTCTCAGAGCATTGAAAATGATAATTCTGATTATATTGATGTATGTACAACAATTATACCACCAATATCACCTGATAAAATTGAAAAGGATGTGGAATGTAATGATGTTATAATGGAATCTGCTGACGCCACAAATGATGTTCAATGCATGCATGAAGACTTTGAAGTAGACAAACAAAGTGATTCAAGAATTAATTTATACGAGGAAGAAAAAGCAAAAGAAGAAGAAGATGGAGCTAGAAGAGGAGAAGAAGGAAGAGGAGAAGAAGAAGAAGATGATGATGATGAAAATAATTGCAATGATGTAGAGGAGATTGAAGTTATTGATAACAAACCAGATGGAAATGCCGATGATGTTTCATTGTCTACAACGAACAATCAGGAAATGGAAGGTGGAACAGTTGAGTTATGGACACCACATTATGATAATAATTGTATTCAAGATAACACACAAGTTGATAATAAGGAAAATATTACCCTAAATGGTTCTGGGGTAGTAGCGTTTTCTTCTTCAGCATCAACTTCTTATTATCCAAGCACATCATCGGGTACTAGCAATTATATTTCGGAAGGACCAGGCCCAAGTCGTGGCGATTGCGGTTTATCATCTTTCCTTGGTTACAATGAACAGCCCGATAATGAAGATTTTTATTCAAGTGTACGTTTACTATCACCAATTAGTTTTCCGAATGATAATTATTCATGGAATCAACGATTTAGTCCTCAATATACACCATTTGAAAGTGGTGATCGTAATTCATATATGGATCTTGATATGTGCAAAGCTAATCAGTCAAATGGTGAAAGGGCTCCATCTGCAGATAGTTTAAATATTAGAACTGATGAAAAAATGCCAGCGAAAGGTGAAATATCAGAACAAGAAAGCAATGGTGATGTGGATGGATCATGGAGTCATCAGATTTACCCTCTTCAGGATACACTACCAAGGTATACAACATCATATGATACAACTGTTGCTAGGGAAAGTTGGAGTCTTAGTACCGATCAAGATCTTCCACACAACATGGAAAATATGTCATCAGTTTTACCAAAATTTACAATACAAGATATATCGGATCCAATTGAGGATGTTAAACCATCTCCAAATGACTTATTATCTAGAGCAACTGCGAAATCCAAACTATTGAAAGCACGAAAATACCGCTGTCCGGATTGTCCAATGATTTTTTCATTACTAAAAGATAAACGAAGTCATCTAATAAATGATCATAACTATCAACCGCCTGTATGTAGTAAAACTACATGTACAACAACTTCTAGTGATCTTAATAACAGTACATTAGTACCGACCACCAGTAGTAATTCAAACTTGCTATCTAACAACAGTTCTGATTTTGTTTCATTTAAACAAGAATTTGGAGCGAATACAACTCATCATTATCCAAATAATATAAACCGCTATTTATTACATTATAATTTTAGTGTTTTTAAACAGAAATGGTTAGAGTGCAATGAAGATAAAAAGATACTGTTTGATTATCCTAAAGGTAATGCGTATTTATGTATGACATGTCAAGAGACGTTTTACAGTATAAAAGCATTTGATGCACATTTAGCAATTCATCCTGCCGAATGTTATACTTGCGATAGAAAATTTAAGCAATGGGGTAATTTAAGTACACATTTAAAACGTCACTTAAATATTCGCACTCATTCATGTAATTTTTGTCCTAAAAGATTTGTACTTCGACAAAATTTAACCGAACACTTAAACACACATAGTCGCGAGGCTCCAATACAATGTAAAATGTGTTTTAAACGATTTCGACGTTATTCAAATTTAATTCAACATCGTAATCACCACCATTTAAAGATTCGTACTAAAGAAAAGGATTTTATTTGCTCTTGTGGTGAGGTATTCCATTCAGAAGCAAAAATTGCATGGCATCGTGAAACACATGAATTAAAGCCAAAATGTTGTCCATATTGTCGTGAAAGATACATGCATAAAAATAGTTTAAGTCGTCATATACGATTATCACATGCAGAACGTTTTGCATCTCATCAGAAATTTACTGTAGCATGCCCAATTTGCAACAACAATTATATGAAATCAAGCTTGAAAACACATTTATTAACACATTCTATAAAATCTGAAAAAAAAATAGAGCACGAATGCAGTATTTGTAATAAATCATTTACAACCAAATGGAATTTAAAACAACACAAATGGATACATACATCACGTTCATCTAAACCATTCAAATGCGCTTTGTGTACGAAAGCATTTATACGAGAAGCTGAGTACATATCACATATGAATATGCATAAATCAATTAAACCTTATACCTGTGATCATTGCGGTTGTCAATTTGCAAGGAAATGTAATTGGttacgtcatacaaaggaacatgaaattccaaaacgttttacgtgtaatgtatgtagtaaagaatttcatagaagctattacttgacagaacatacaagaacgcatactggtgaacgaccatttgaatgtggtatatgtggtaaaacatcaactacaaaaacgaaccacaataagcatgtaaaaattcatCATGCCCGCGATCCATTAACCGCTGAAGGTTAA
- Protein Sequence
- INETTVATETDENINNSKVNQNKKPVNADVEAVRKTGIEQTTKSSLSDLQSNCNEIESILSVSTEKCTSAATSVIRMISPQPALRTELVNVRSLIKTPYKKVPKKIVVKFIKPFIPAQEEEINILPPVKHLSNTDQVRLKQEIVDDNESKKNIQNEILSQFDFPFSPLRQSFTPVPSLINNSQSIENDNSDYIDVCTTIIPPISPDKIEKDVECNDVIMESADATNDVQCMHEDFEVDKQSDSRINLYEEEKAKEEEDGARRGEEGRGEEEEDDDDENNCNDVEEIEVIDNKPDGNADDVSLSTTNNQEMEGGTVELWTPHYDNNCIQDNTQVDNKENITLNGSGVVAFSSSASTSYYPSTSSGTSNYISEGPGPSRGDCGLSSFLGYNEQPDNEDFYSSVRLLSPISFPNDNYSWNQRFSPQYTPFESGDRNSYMDLDMCKANQSNGERAPSADSLNIRTDEKMPAKGEISEQESNGDVDGSWSHQIYPLQDTLPRYTTSYDTTVARESWSLSTDQDLPHNMENMSSVLPKFTIQDISDPIEDVKPSPNDLLSRATAKSKLLKARKYRCPDCPMIFSLLKDKRSHLINDHNYQPPVCSKTTCTTTSSDLNNSTLVPTTSSNSNLLSNNSSDFVSFKQEFGANTTHHYPNNINRYLLHYNFSVFKQKWLECNEDKKILFDYPKGNAYLCMTCQETFYSIKAFDAHLAIHPAECYTCDRKFKQWGNLSTHLKRHLNIRTHSCNFCPKRFVLRQNLTEHLNTHSREAPIQCKMCFKRFRRYSNLIQHRNHHHLKIRTKEKDFICSCGEVFHSEAKIAWHRETHELKPKCCPYCRERYMHKNSLSRHIRLSHAERFASHQKFTVACPICNNNYMKSSLKTHLLTHSIKSEKKIEHECSICNKSFTTKWNLKQHKWIHTSRSSKPFKCALCTKAFIREAEYISHMNMHKSIKPYTCDHCGCQFARKCNWLRHTKEHEIPKRFTCNVCSKEFHRSYYLTEHTRTHTGERPFECGICGKTSTTKTNHNKHVKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -