Basic Information

Insect: Penthetria funebris
Gene Symbol: -
Assembly: GCA_027564355.1
Location: JANSTX010018840.1:6356-11868[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 9e-07 5.6e-05 23.3 2.2 1 23 311 333 311 333 0.98

2 9 1.7e-06 0.0001 22.4 1.2 1 23 339 361 339 361 0.98

3 9 0.00015 0.0095 16.3 2.0 1 23 367 389 367 389 0.98

4 9 2.4e-05 0.0015 18.8 0.8 1 23 395 418 395 418 0.92

5 9 3.5e-05 0.0022 18.3 0.5 1 23 426 448 426 448 0.95

6 9 0.0062 0.39 11.2 4.0 1 23 460 482 460 482 0.98

7 9 7.3e-06 0.00045 20.4 0.9 1 23 492 515 492 515 0.97

8 9 3.5e-05 0.0022 18.3 0.1 2 23 523 545 522 545 0.97

9 9 0.034 2.1 8.9 1.1 2 23 555 576 554 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	9e-07	5.6e-05	23.3	2.2	1	23	311	333	311	333	0.98
2	9	1.7e-06	0.0001	22.4	1.2	1	23	339	361	339	361	0.98
3	9	0.00015	0.0095	16.3	2.0	1	23	367	389	367	389	0.98
4	9	2.4e-05	0.0015	18.8	0.8	1	23	395	418	395	418	0.92
5	9	3.5e-05	0.0022	18.3	0.5	1	23	426	448	426	448	0.95
6	9	0.0062	0.39	11.2	4.0	1	23	460	482	460	482	0.98
7	9	7.3e-06	0.00045	20.4	0.9	1	23	492	515	492	515	0.97
8	9	3.5e-05	0.0022	18.3	0.1	2	23	523	545	522	545	0.97
9	9	0.034	2.1	8.9	1.1	2	23	555	576	554	576	0.95

Sequence Information

Coding Sequence: ATGAGCATCAAAATTGATATCACCGTTTGTCGTGTATGTTTACAATATGAAAATGGAATTTCATTAGTTAATGAACAAGAATCGATAGAGAAATTTGAAAATGTCACACAACTTAAGATTGGTAAAGATGATGGTCTACCATCGATATTATGCAAAAAATGTTGTGGACGTCTTAAAATTGCTTATGATTTTAAACAACAAAGTGCCACATCTGATCAATATTTAAGACAATTTATTAGTAAAATGAATAGTGAATTCATTGAATCAACAAATAAATCAACAAAAAAAGAAAATAATGATAATGATGAGGAATTACAATTACTACTTGAAAGTGGCTATCATCCAGATCAAGTTACTATAAGTGAGGTACATGAAGTGCCAACAGTAGCAACAAAGATCGAAATTGAAGAACAAGAAAATAAATATGAATTGAAACAACATGTCGATGATAATCTAGATGAACAAATTGATGAGGAAATAATAACTGATCAGGAAGCATGTTTAGAATATTATAATGTACAAATTGAAAATGAACAACAAATAATTTACGATCAAATTGAAAGCGAACAACAATATGTGGACGATAGAACTGAAAATGAAGAACAATATGAGGAAGATAGAACTGAATACATAGGGGAAATTGAATATATAgatgaatcaatatcattagaacatgatggtgaaaatcaaaataatgcagacgaaataaatgagcaatatgatgatcaaaatgatattgaggaaaacgttgatgacaatgatgatgatgatattaatggtgaagatattgatgatgatgatttatcacaaaataataaGAACTTTTTAATGAGTCGATCTATGACTTCAGGCGATAGCATGAATGACGAACCGTCGTCAAAGAAGAAATTAAAAAGAATTGAATATTCAACTAGTGGAGATTCACCAGGttattattgtgctaaatgtaaaaaagatttcagcacaaaaacaaatttaataagacatttactgacacatgacggttccaagccatatcaatgtacaatttgtggcagtggttttacacaaaatggatcattaaaacaacatatgcatattcataccggtgaacgtccatataaatgtgaagtttgtaatcgtggttttacgcaaagtaaatcattggcgtttcacaggcgtcgtcatacaggtgagaagccatttacatgtgcacaatgtggactgtcgtttagacaacgagatGGACTGAAGCGTCATGAATTTGTCAAGCATTCTGATTGCGAATTACAAACATATCCATGCACAATATGTGGCAAAGTTTTACGTTCAAAACATTCCATGCAATTGCATatggttgcacacatgaATTTACATAGTACTGGTCCGACGAAGAAATATCGATGCACAAAATGTGTTAAAACATTTTTAATAAAGCAGAATCTAATTAATCACATGAAACATCATTCGGTAAATGATGATGATTTTCTAATTTATAAATGTGATGAATGCGATATTAGTTTCAATTCACAGCGTGGACTCAAATTACATCGTAATAGTCAACATGCCGAAATGAATGATGTTAATCAATGTGAAATTTGTAATATACCATTTGTCACTGCTAATGATTTAAATAGCCATATGATAAGAGAACATAATGGTACAATTGATTCAGTGACTTTAAATTGTCCTCATTGTGATGACAAATATATATCGAAGAGGGATTATTCTAATCATCTATTGGAACATGAATTAGAAGATATTAAATGTTGA
Protein Sequence: MSIKIDITVCRVCLQYENGISLVNEQESIEKFENVTQLKIGKDDGLPSILCKKCCGRLKIAYDFKQQSATSDQYLRQFISKMNSEFIESTNKSTKKENNDNDEELQLLLESGYHPDQVTISEVHEVPTVATKIEIEEQENKYELKQHVDDNLDEQIDEEIITDQEACLEYYNVQIENEQQIIYDQIESEQQYVDDRTENEEQYEEDRTEYIGEIEYIDESISLEHDGENQNNADEINEQYDDQNDIEENVDDNDDDDINGEDIDDDDLSQNNKNFLMSRSMTSGDSMNDEPSSKKKLKRIEYSTSGDSPGYYCAKCKKDFSTKTNLIRHLLTHDGSKPYQCTICGSGFTQNGSLKQHMHIHTGERPYKCEVCNRGFTQSKSLAFHRRRHTGEKPFTCAQCGLSFRQRDGLKRHEFVKHSDCELQTYPCTICGKVLRSKHSMQLHMVAHMNLHSTGPTKKYRCTKCVKTFLIKQNLINHMKHHSVNDDDFLIYKCDECDISFNSQRGLKLHRNSQHAEMNDVNQCEICNIPFVTANDLNSHMIREHNGTIDSVTLNCPHCDDKYISKRDYSNHLLEHELEDIKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -