Pfun001157.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- -
- Assembly
- GCA_027564355.1
- Location
- JANSTX010002570.1:1-5802[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0016 0.098 13.1 0.4 2 23 194 214 193 214 0.96 2 12 5.6e-05 0.0035 17.6 1.9 1 23 249 271 249 271 0.97 3 12 0.027 1.7 9.2 1.0 2 23 427 447 426 447 0.94 4 12 9.9e-05 0.0062 16.8 0.2 1 23 453 478 453 478 0.96 5 12 3.1e-06 0.00019 21.6 2.3 1 23 484 506 484 506 0.97 6 12 0.057 3.5 8.2 0.5 2 23 672 692 671 692 0.93 7 12 4.6e-05 0.0029 17.9 0.3 1 23 698 723 698 723 0.96 8 12 0.00026 0.016 15.5 6.3 1 23 729 751 729 751 0.97 9 12 0.04 2.5 8.7 0.5 2 23 905 925 904 925 0.93 10 12 0.0004 0.025 14.9 0.1 1 23 931 956 931 956 0.95 11 12 0.0081 0.51 10.8 3.5 1 23 962 984 962 984 0.90 12 12 0.29 18 5.9 0.1 2 13 990 1001 989 1001 0.87
Sequence Information
- Coding Sequence
- AAGCCACAGCTTTTGAGCGAAATAAAACAAGAAGAGTCAGATCATTTTAATGAACTTCCTATTGACAAGATTTCAGTTGATAATATTATTGTTAAAGAGGAACTAATAATTGACTGTAAAGAAGAAGAAGAGGACGTCGAATGTATGTCAATTGTAACTGAAGTGATAGGTAATGAAATTTCGTCTGATGAATTAAATAAAAATATTTCAACATCTCGTGATGAAGTTTTTAAAAGTATAGACGGAAATGTTGACGTCCATGTAATTAATCATGATGAATTAAATGAAAGTATTTCAGCAACTCATGATGATACTAGAAATAAAGACACAATTTTAATTGATCATGACGAATTTAATAAAAATTCTTCAGCATCTCATGACAAGAACTTTAACCGTAATTATAATTTGAATGTTGATACGATTTTAATTAATCGTGCTAATAGTTCTAATTATGACAATGAGTTATTTGTACCAATAAAATCAAGTGAATTAAAATGTACCTCAACTAATAACTCAAAAGTAGTGCGATGTTATCCAGGAAAATTTCCAAAACGTACAAGTAAATTTAAGCCATTCCTACCATGTCATGTATGTGGAAGATTTTACGAAGAAAGTGAACTGAAAAATCATATTAATGTTCACTACAATAAAAGCCTAATTGGTGATGGTTGTGCAAGTAAATTTTCAGGACCTTCATATTTAGCAAATCATGAAACAAAAAATGTACATACAACAGCACAACTATTTCAGTGTAATTTTTGCGATAAGATTTTTAAGACTGAATTAAATTTAAAAACTCATGAATCTTCCCACGGTGAACGAACATTACCATGTCACGTCAATTTAAATATGACAAAAAATAAcgaaatagaacaagaagagtctcatcattttgatgaacatcctattAAAAAGATTTTACTTGATAATAATATAGTTACAGAGGAACTAGTAATTTACTGTGAAGATAGAAAAGAATGTGAACAAGATTTGCCAGTTGTAATTCAAATTATAGATGATGAAATTTCTTCTCTTGAAAAAATTGATGGTATTTCAGCAAATCATGATGATGATATTAAAAGCAAAGAAAGCATAGATACTAGAAATGTAGACACAATTTTAATTAATCGTTCTAATGGTGCTAATTATGATAATTATTCATTCGTAGCAATAAAATCAAATGAATTAAAAAGTACCTTAACAGATAGTTCAGAACCAGTGTGTAGCTATCCAAGAAAATTTCCAAAACGTACATATAAATATAAACCACCATTCCTACCATGTCATATATGTGGAAAATTTTACGAAGGAAGTAAACTGAAATATCATCTTAATGTTCATAACAATGAAAAACCATTTGTTTGTAATGTTAATGATTGTGGAAGTAAATTTTCATCACCTTCATATTTAACAATTCATAAAAAAATTGTACACACAACAGCACGACCATTTCAGTGTGATATTTGTCAGAAGTCTTTTAAGACTAAATTAAATTTAAAAACTCATGTTACTTCTCATGGTGAACCAACATTAACTAGTCACGTCAGTTTAAAAATGGCAATAAAAAATAAAATAAAAAAATATACAAATAATCaacagcatttgagcgaaatggaacaagaagaatctaatcattttgatgaacatcctTTTGAAAAGATTTTAATTGATAATAATATAGTTAAAGAAGAACTAATAATTGACTGTGAAGAAGAAAAAGAAGACGAAAAAGATGTACGAGTTGTAATTGAAGTGATAGATGATGAAATATCCTCTCTTGAAAAAATTGAAAGTATTTCAACCACTCATGATGATGATATTAAAGGCATAGATACTAGAAATGTAGACACAATTTTAATTGATTGTGCTGATAGTGCTAGTTATGCTAATGAGTCATTGTTAGCAATAAAATCAAATGAATTAAAATGTACCTTAACTGATAATTCAGAAGTAGTGCGATGTTATCCAAGAAAATTTTCAAAACTTACATCTAAATATAAACGACGTTTGATACCATGTCGTATATGTGGAAAATTTTATGAAAGAAGTAAAATGAAATATCATCTTAATATTCATAACAATCAAAGGCCATTTGTCTGTAATGTTGATGGTTGTGGAAGTAAATTTTCAGAACCTTCAAATTTAACACGTCACAAACGATATGTACATTCAACAGCACGACCATTTCAGTGTGATAGTTGCCATAAGTCTTTTAAGACTAAATTAAATTTAAAAACTCACAAAACATCTCACGTCAGTGTGAAAATGACAATAAATAATAAAATAAAAAAATTGACAACTAAACAACAACATTTAAGCAAAATAAAAGAAGAAGAGTCTAATCATATTGATGAACTTCATATTGAAAAGATTTCAATTGATAAAAATATAGTTAAGGAAGAACTAATAATTGACTGTAAAGAAGAAGAAGAGGACGAAGAAGATTTGCCTGTTGTAATTGAAGTGATAGATGATGAAATTTCCTCTTTTGGTATGTCAGCAACTCATTATGATGACACTAAAAGCAGAGTTACTAGAAATGTAGACACAATTTTTATTAATCGTGCTGATAGTGCTAATTATGCTAATGAGTCATTCGTAACAATAAAATCAAATGAATTAAAATGTGCCTCAACTGATAATTCAAAAGTAGTTCGAAGTTATCCAAGAAAATTTTCTAAACTTACATCTAAATATAAACGGAATTTGATACCATGCCGTATATGTGGAAAATTTTACGAGAGAAATAAACTGAAATATCATCTTAATATTCATAACAATGAACGGCCTTTTGTTTGTAATGTTGATGGTTGTGGATCTGAATTTACATCACCTTCATCTTTAATAAATCATAAGAAAaatgtgcatacaacagcacgaccatttcaatgtgatatttgccataagccatttaaaAGTACAGCAGATTTGAAATTTCATAAAACTTATCACGGTGAACCAACATTACCATGTCACATCTGTGGAAAAATGACAAGGAATCAGTAA
- Protein Sequence
- KPQLLSEIKQEESDHFNELPIDKISVDNIIVKEELIIDCKEEEEDVECMSIVTEVIGNEISSDELNKNISTSRDEVFKSIDGNVDVHVINHDELNESISATHDDTRNKDTILIDHDEFNKNSSASHDKNFNRNYNLNVDTILINRANSSNYDNELFVPIKSSELKCTSTNNSKVVRCYPGKFPKRTSKFKPFLPCHVCGRFYEESELKNHINVHYNKSLIGDGCASKFSGPSYLANHETKNVHTTAQLFQCNFCDKIFKTELNLKTHESSHGERTLPCHVNLNMTKNNEIEQEESHHFDEHPIKKILLDNNIVTEELVIYCEDRKECEQDLPVVIQIIDDEISSLEKIDGISANHDDDIKSKESIDTRNVDTILINRSNGANYDNYSFVAIKSNELKSTLTDSSEPVCSYPRKFPKRTYKYKPPFLPCHICGKFYEGSKLKYHLNVHNNEKPFVCNVNDCGSKFSSPSYLTIHKKIVHTTARPFQCDICQKSFKTKLNLKTHVTSHGEPTLTSHVSLKMAIKNKIKKYTNNQQHLSEMEQEESNHFDEHPFEKILIDNNIVKEELIIDCEEEKEDEKDVRVVIEVIDDEISSLEKIESISTTHDDDIKGIDTRNVDTILIDCADSASYANESLLAIKSNELKCTLTDNSEVVRCYPRKFSKLTSKYKRRLIPCRICGKFYERSKMKYHLNIHNNQRPFVCNVDGCGSKFSEPSNLTRHKRYVHSTARPFQCDSCHKSFKTKLNLKTHKTSHVSVKMTINNKIKKLTTKQQHLSKIKEEESNHIDELHIEKISIDKNIVKEELIIDCKEEEEDEEDLPVVIEVIDDEISSFGMSATHYDDTKSRVTRNVDTIFINRADSANYANESFVTIKSNELKCASTDNSKVVRSYPRKFSKLTSKYKRNLIPCRICGKFYERNKLKYHLNIHNNERPFVCNVDGCGSEFTSPSSLINHKKNVHTTARPFQCDICHKPFKSTADLKFHKTYHGEPTLPCHICGKMTRNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -