Pfun002880.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- topi
- Assembly
- GCA_027564355.1
- Location
- JANSTX010058594.1:1-7094[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.095 13.1 0.4 2 23 252 272 251 272 0.96 2 12 1.7 1.1e+02 3.5 0.1 5 21 281 297 280 301 0.86 3 12 2.3e-05 0.0014 18.8 1.3 1 23 307 329 307 329 0.97 4 12 0.0037 0.23 11.9 2.9 1 23 501 522 501 522 0.89 5 12 0.00045 0.028 14.8 0.3 1 23 528 553 528 553 0.94 6 12 1.4e-06 8.5e-05 22.7 1.6 1 23 559 581 559 581 0.96 7 12 0.044 2.7 8.5 0.4 2 23 751 771 750 771 0.95 8 12 0.0028 0.17 12.3 0.2 1 23 777 802 777 802 0.96 9 12 0.0014 0.086 13.2 4.0 1 23 808 830 808 830 0.96 10 12 0.0086 0.54 10.7 4.1 2 20 836 854 835 857 0.93 11 12 1e-07 6.3e-06 26.3 1.3 1 23 863 885 863 885 0.99 12 12 0.00056 0.035 14.5 1.5 1 23 891 914 891 914 0.95
Sequence Information
- Coding Sequence
- TTACAGAAAGATGATGAATTACCCCAATATATTTGTCGTCAATGTTTTCAGCATTTGTTATTAATGAAAAAATTTAAAAACAAATGCTTACAATCAAATAATATTTTGCAAAATCAATTAAAATTATTAAAAGAAATTAATTGTAATGATTTTAAAATAACACCAACTATAAATAAGCAACAACATTTGAGCGAAATACTACAAAAAGAGTCAAATCATTTTGATGAACATCCTGCTGAAAAGATTGCAATTGATAATAATATAGTTAAAGAAGAGCTAATAATTGAATGTGAAGAAGAAGAAATGGACGAGGAATGTTTGCCAATTGTAACTAAAGTGCTAGCTACTGAAATTTCGTCTGAAGAATTAAACAAAAATATTTCAACATCTCTTGATGACGATTTTAAAAGTATAGACAGAAATTTTGACGTACATGCAATTGATCATGATGAATTCAATGAAAGTATTTCAACAACTCATGATGATACCAGAAATGAAAACATAATTTTAATTGATCATGACAAATTAAATGAACGTTCTTCAGTATCTCATGACGAGAACATTAACAGTAAAGTTAATTTGAATGTTGATACAATTTTAATTAATCGTGCTAATGGTCCTAATTATGATAATGAGTCATTTGTACCAAAAAAATCAAGTGTATTCAAATGTACCTCAACTGATAACTCAAAAGTAGTGCGATGTTATCCAGGAAAATTTCCAAAACGTACAAGTAAATTTAAGCCATTCCTTCCATGTCATGTATGTGGAAGATTTTACGAAGAAAGTGAACTGAAAAATCATATTAATATTCATAACAATAAAAGGCCAATTGGTGATGGTTGTGGAAGTAAATTTTCAGGACTTTCATATTTAGCAAATCATGAAACAAAAAATGTACATACAACAGCACGACTATTTCAGTGTAATTTTTGCGATAAGTCTTTTAAGACTGAATTAAATTTAATAACTCATGCAACTTCCCATGGTGAACAAACATTACCATATCACGACAGTTTAAAAGTGACTAAAAATAATTGTTATAAAATAACACCAAATACATTTTGTAGTAAAATAACACCAACTACAAATAAACAACATcattttagcgaaatagaacaagaagagtctagtcgttttgatgaacatcctattGAAAAAATTTCAATTGATAATAATATAGTTAAAGAAGAACTAATAGTTTACTGTGAAGAAGTTGAGGACGAAGAAGATTTGCCAGTTATAATTGAAGTGATAAATTCGGAAATATCTTATGATGAACTAAATGAAAGTATTTCAACAACTCATAATGAAGGCATTAAAAGTGTGGACACAAATATTGATGCAAAATTAATTAGTCGCGCTAATGCTACTGATAATGAGTCATTGTTAGCAATAAAATCAAATGAATTAAAATGTACGCCAACTGATAATTTGGAAGTAGTGCGTAACTATCCAAGAAAATTTCCAAAACGTATAGGTAAATATAAACCACCAACCCATCCGTGTAATATATGTGGAAAATCTTTTGAAAGAAAAAAACTGAAATATCATTTTAATGTTCACTACAATGAAAAACCATTTGCTTGTAATGTTGATGGTTGTGAAAGTAAATTTTCAAGACCTTCATCTTTAACAAATCATAAAAGAAATGTACATTCAGCAGGACGACCATTTCAGTGTGATATTTGTCAGAAGTCTTTTAAGACTAAATTAAATTTAAAAACTCATATAACTGCTCATGGTGAACCAACATTAACTAGTCACTTCAGTTTAAAAATGGCAATAAAAAACGAAATAGAACAAGAAGAGTCTAGTCATTTTGATGAACAATCTAATGAAAACATTTCAATTGATAATAGTATAGTTAAGGAAGAATTAATAATTGACTGTAAAGAAGAAGAGGAGGACGAAGACGATTTGCCAGTTGTAATTGAAGTGATTGATGATGAAATTTTCTCTCTTGATATAATTGAGGGTATTTCAACAACTCATGATGATGATATTAAAAGCGTATATACTGGAAATGTAGACAAAATTGTAATTGATCATGACGAATTTAATGAAAAAATTTCAGCATCTCATGACGAAAACATTAACCGTAAAGTTAAATTGAATGTTGATAATGAGGCATTGGTAACAATAAAATCAAATGAATTAAAATGTACGTCAACTGATAATTCAGAAGTAGTGGAATGTTATCCAGAAAAAAATTCAAAACTTACAAGTAAATATAAACCGCCATTCCTACCATGTCGTATATGTGGAAAATTGTACGAAAGAAGTAAACTTAAATATCATCTTAATATTCATAACAATAAAAAACCATTTGTTTGTACTGTTAATGGTTGTGGAATTAAATTTGCAGCACCTTTTCATTTAGCAAAACATAAAAAAATTGTACATTCAACAGCACGACCATTTCAATGTGATATTTGCCATCAGTCTTTTAAAATTAAAACAACTTTGGAAAATCATAAAACTTATCATGGAGAACCGACTTTACCATGTCATGTCTGTGGAAAAATGACAAGAAATCATCGTGCACTAAAACAACACCTGCTTTGtcatactggtgaacgctcattcaaatgcgacatatgtgaaaaatcatttcaaaccaaatatgcattacgtgtccatatgcgtatgcatacgaaagaaaaaccttatatgtgtaagagatgtgGAGAAGCCTTCGGTTATAATTGTTTATTGAAAGCACACATGGGAAAGTATCATTAA
- Protein Sequence
- LQKDDELPQYICRQCFQHLLLMKKFKNKCLQSNNILQNQLKLLKEINCNDFKITPTINKQQHLSEILQKESNHFDEHPAEKIAIDNNIVKEELIIECEEEEMDEECLPIVTKVLATEISSEELNKNISTSLDDDFKSIDRNFDVHAIDHDEFNESISTTHDDTRNENIILIDHDKLNERSSVSHDENINSKVNLNVDTILINRANGPNYDNESFVPKKSSVFKCTSTDNSKVVRCYPGKFPKRTSKFKPFLPCHVCGRFYEESELKNHINIHNNKRPIGDGCGSKFSGLSYLANHETKNVHTTARLFQCNFCDKSFKTELNLITHATSHGEQTLPYHDSLKVTKNNCYKITPNTFCSKITPTTNKQHHFSEIEQEESSRFDEHPIEKISIDNNIVKEELIVYCEEVEDEEDLPVIIEVINSEISYDELNESISTTHNEGIKSVDTNIDAKLISRANATDNESLLAIKSNELKCTPTDNLEVVRNYPRKFPKRIGKYKPPTHPCNICGKSFERKKLKYHFNVHYNEKPFACNVDGCESKFSRPSSLTNHKRNVHSAGRPFQCDICQKSFKTKLNLKTHITAHGEPTLTSHFSLKMAIKNEIEQEESSHFDEQSNENISIDNSIVKEELIIDCKEEEEDEDDLPVVIEVIDDEIFSLDIIEGISTTHDDDIKSVYTGNVDKIVIDHDEFNEKISASHDENINRKVKLNVDNEALVTIKSNELKCTSTDNSEVVECYPEKNSKLTSKYKPPFLPCRICGKLYERSKLKYHLNIHNNKKPFVCTVNGCGIKFAAPFHLAKHKKIVHSTARPFQCDICHQSFKIKTTLENHKTYHGEPTLPCHVCGKMTRNHRALKQHLLCHTGERSFKCDICEKSFQTKYALRVHMRMHTKEKPYMCKRCGEAFGYNCLLKAHMGKYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -