Pfun002452.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- -
- Assembly
- GCA_027564355.1
- Location
- JANSTX010056074.1:313-2747[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00033 0.02 15.2 2.4 1 23 188 210 188 210 0.98 2 14 0.00027 0.017 15.5 1.4 1 23 240 262 240 262 0.96 3 14 0.024 1.5 9.4 2.4 3 23 302 322 301 322 0.93 4 14 0.18 11 6.6 2.8 1 23 329 351 329 351 0.94 5 14 0.00062 0.039 14.3 1.3 2 23 369 391 368 391 0.93 6 14 2.9e-05 0.0018 18.5 3.5 1 23 415 437 415 437 0.96 7 14 0.053 3.3 8.3 8.4 1 23 450 472 450 472 0.98 8 14 0.0012 0.076 13.4 2.3 1 23 477 500 477 500 0.96 9 14 9.4e-06 0.00059 20.1 0.6 3 23 508 528 506 528 0.96 10 14 0.00033 0.02 15.2 2.7 1 23 534 556 534 556 0.98 11 14 7.9e-05 0.0049 17.2 2.0 1 23 562 584 562 584 0.98 12 14 0.0067 0.42 11.1 0.1 2 23 591 613 590 613 0.96 13 14 0.00041 0.025 14.9 2.0 1 23 622 644 622 644 0.97 14 14 2.2e-05 0.0014 18.9 5.4 1 23 650 672 650 672 0.98
Sequence Information
- Coding Sequence
- ATGCCCTATTGTATTGTTACTAATTGTAATAATCGCACAACGAAAAAAACTGCAAAACAATTGGAATTGGAGAAGATAAACAATGCACATTTTTCCTTTTTTAAATTTCCGTGGAAGGAAAAGGAGAAACTAATTTGGTGTGAAGCTTTAAATATTAAGGATAAAAGTATCATTTCGGAATGGTCAACCGTTTGTAGTGTTCACTTTAATGATGGTGATTTTAAATCGATAACAACAGTGAGAAAGTTGAAGCCAGCAGCTGTTCCTGTTCCTATTCCTATTCCTTTGCCGGATCGAAAATGTATAGAGAAAAATGATGATGAAACCAATGAAATACAAGTGAATACATTGGCAAATTCTGAGTCGAAAGAAGATACTATTACCACAGTACAGTACAAGAATTCAATTGAAAATAATGAAATCATTTCACTTTGTGATGTGAATAGTACAACAATAAATATAAAAAGTAATATACAATTAAAAGCACCAATAAATACTATGAATACAAATGAATTAAGTTTAAATTCACATAAATATTTACATTATAAAATGTTAAATGTATTTACTTGTACAATATGTGATGCAGTTTTTTGTACTATTGAAACATTTAATAAACATCGTCAATTACATATTAATAATAAAATTGAAATTATTGATAAGAAATCAATAGTACGTAATAATAATAATAAAATAATAGAAATATTACAGAGTAAGGCTCATGAATGCGATATATGTTTTAAAATATTTATAACTAATGAAAAATTACAGATTCATAAACAATTGCATGACAATGATATAGCAATGAATACTTTAAATGAAGATAAATCAAAAAAAAATCCATTTGTTCAAATACAACAGGAACAACAAGTAAATGAAAAAAAACAACAACGAATAACTGTCTTTTGTGTTACATGTAACAAGAAATTTTATTCAAAAGAAAAATTTATAAAACATAATATTCAACATATTCCATCAGCAAAATTTTATGAATGTAAAAAATGTGATATACTTTTTAATAATAAGTATATATTTAATTCACACAAATTTTCACATTACTTTAGTGATCATCTAGCCGACCAAATTGAATGTATTGATATAAAAAATAAATGCAATCAATGTACAATGGTTTTTAAATCAAGAAAAGAATTACGTATACATAAACTTGAGGAACATAAAAAGAATAAAATAAATGACAATGAAATGATGATGATTGACACAAAAAATTATGTACAACATCAACGGCATTTTTGTGATATTTGTAAAAAAAAATTTACAAAATTATCCACATTAGAAAAGCATATTGCAAAACATCAGGAACAAGTAGAAGAAGATGATGAAAATCATATATATAAATGTTGTCATTGTGATCAAATATGCGATAGTAAATTGTCATTAAAAAGACATGAAAATCGACATATTGAAAATAAATTTAAATGTGATATATGTTATAAATTATATTGTGATGTAAAAACATTAAAACGCCATATAATGTTAATACATTTGGGTAGTCGATCGATAAATTGTACAATTTGTGATAAAATATTTACAAATGCTGAATCTTATAAAAGTCACAAACGCATTCACACAGGCAGAAATTGTTTTATATGCGAATATTGTGGTAAAATAACGAATAGTTTTCAACATTTTCAAGCACATCAAACAACACATACAAATGAATTTAATTATGAATGTAAAATATGTAAACAGAAATTTAAAATTAAAACTGCATTGTATAAACATCAAAATGTGCATACACGTAAATCATCTGTTGAATGTAAATTGTGTGGCATTCAATTAGCCTCACGTAGTACATATTTAGCGCATATACAACGTAAACATAAAACAAATAATGATAATGCATTGCATACGTGTAAATATTGTAATAAATCATATGCAGAATCATCAATACTTTTAAAACACATGAGTATACATAAACGTGAGACGAATTTCTCATGTAATCATTGTGAAAAAGTATTTTACCGTAAAGATTATtatcgtttacatttaaaaacacatatacataatattgttattcataataataataatgataatcatattcataataatgataatcataatattgatgataataataataataatgataataataatattagtgcatgtagtgatcaaattgatgtggtaactatataa
- Protein Sequence
- MPYCIVTNCNNRTTKKTAKQLELEKINNAHFSFFKFPWKEKEKLIWCEALNIKDKSIISEWSTVCSVHFNDGDFKSITTVRKLKPAAVPVPIPIPLPDRKCIEKNDDETNEIQVNTLANSESKEDTITTVQYKNSIENNEIISLCDVNSTTINIKSNIQLKAPINTMNTNELSLNSHKYLHYKMLNVFTCTICDAVFCTIETFNKHRQLHINNKIEIIDKKSIVRNNNNKIIEILQSKAHECDICFKIFITNEKLQIHKQLHDNDIAMNTLNEDKSKKNPFVQIQQEQQVNEKKQQRITVFCVTCNKKFYSKEKFIKHNIQHIPSAKFYECKKCDILFNNKYIFNSHKFSHYFSDHLADQIECIDIKNKCNQCTMVFKSRKELRIHKLEEHKKNKINDNEMMMIDTKNYVQHQRHFCDICKKKFTKLSTLEKHIAKHQEQVEEDDENHIYKCCHCDQICDSKLSLKRHENRHIENKFKCDICYKLYCDVKTLKRHIMLIHLGSRSINCTICDKIFTNAESYKSHKRIHTGRNCFICEYCGKITNSFQHFQAHQTTHTNEFNYECKICKQKFKIKTALYKHQNVHTRKSSVECKLCGIQLASRSTYLAHIQRKHKTNNDNALHTCKYCNKSYAESSILLKHMSIHKRETNFSCNHCEKVFYRKDYYRLHLKTHIHNIVIHNNNNDNHIHNNDNHNIDDNNNNNDNNNISACSDQIDVVTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -