Pfun006078.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- -
- Assembly
- GCA_027564355.1
- Location
- JANSTX010041318.1:8672-12601[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.5e-05 0.0028 17.9 0.9 1 23 321 344 321 344 0.95 2 11 0.0084 0.52 10.8 3.8 3 23 352 372 350 372 0.95 3 11 8.1e-06 0.00051 20.3 1.6 1 23 378 400 378 400 0.98 4 11 0.00027 0.016 15.5 1.4 1 23 409 431 409 431 0.95 5 11 6.4e-05 0.004 17.4 1.3 1 23 437 459 437 459 0.98 6 11 0.0023 0.14 12.5 1.2 1 23 465 487 465 487 0.98 7 11 0.00018 0.011 16.1 2.0 1 23 493 515 493 515 0.96 8 11 4.1e-07 2.6e-05 24.3 0.5 2 23 521 542 520 542 0.97 9 11 8e-05 0.005 17.1 2.2 1 23 548 570 548 570 0.98 10 11 3.7e-05 0.0023 18.2 4.1 1 23 575 597 575 597 0.98 11 11 0.00033 0.02 15.2 5.1 1 23 603 625 603 626 0.96
Sequence Information
- Coding Sequence
- ATGTGTCGTTCTTGTTTGTCAACTGAAAAGGATTTGATAAATTTATTTAATAGTCAATATGATAGTAATCATACATTTTGGGAATTATTTGTTATTTGTACAAATAAAAGTGATGCGACAACTGTTACTGAAACGGTATCTTCTGAAAATGAAAATGAAATTACAATCCCAAAAACATTGTGTGTTGAATGCTTAAATGATTTAAAAATAGCCTATAATTTTCGTGAAAGATGTGAAAAATCTAATCGCATTATTAGGAATATGCTTAAAGAAAATTTGTTATGTGAAATTTTGGAGTTTGAACAACAAAATTCCGTCGTAGGTTGTCCATCAACAAATTATGTTATGTCAGAAAGGACATTTAGTCGTTTGGCATCTATTCAACGAGATCCGAAATTAAATAGACCCCGAAAAAAATGGTTAATTGAGCAGCATCAAGAAGAAAATCAAATAAAAGGAGAAAATTTGGAAATTGAAATTATAACCGAATCAAATTTTGATAATAATTTAAAATATGAATTTATTGGTGAAGATGGTTTTGTTCATGATGTCGACGATAATGACGATGATATTGTTGAAAATGATGGAACTGTTGAAATTTTAGAAACAATTGAAGATTTAGATACTACAGAACAATCAAATACTATAGAAGATTTAGATACAATAGAACATTTAGATACTACAGAACATTTAAATACGGTTGAACAATTGGATTCTGTTGAAAGTCTCGAAAATGCAGAAAGTATAGTGTGTATTGGAAACAGAAGTGAAAATGTAGACAGTAATATAGAAAATTTAGATAATAGTTTGGAATGTGTACATGAAATAAAGAATGTATTACATACACAATGTATTGAAGATGAAGACGAATCCTATGTGGAATATTTCAAAACAAAGAATAATGAAGATAAGTTAATGGCGAAAGAAATGGGTATGAGAGAACCATCGATGAGAAATTGGTTTGAATGTGAACAATGTAAAAAAGGATTCAAAATGAAACAATCACTTGAAAAACACATTGAACTTTCTCACAATGGTAAAACACTTCATTTATGTAATTTTTGTGGTAAACTTTGTTCACAAGAGACATCATTGAAAGCCCATTTATTACAACATCAAGGTTGTCGACCGTTTAAATGTAATGAATGTGATAAATCGTATTTCACAAAGAATGGTCTTCAGAATCATCAGGTTATGCATGCAGATAATAAACCAGAGGCAAAATTTTTATGTTCTACTTGTGGAAAAGGTTTTACAACCAATCAACGCCTGATGGTACACACATTTACTCATACTGGTGAACGTAATTTTAGTTGCGATCTTTGTGaaaaatcttttgcaaccgaatttcgattgcgtagtcatcgtagaattcatactggtgaaagaccatatcaatgtcaagaatgtggacttacatttgcccaaggcaacgcattaaaatgtcacaaaagggtacatactggtgaaaaaccatatgaatgtaaattttgtggaaaacgtttttcacaaaatacaattttaaaaacacatttaaccttacatacgggaaaaactgttaaatgtccagattgcgataagaaattcagtagagcatcatatttaatattacataaacgtgaacatacaggtgaaaaaccgtatgtatgtgatcgttgtccaaatcgttataaacaaaaaagtcatttagatagacatattgatacacatttgggtataaaacataaatgtaatatatgtaaaaaggaatattcaaaacagtggtcattaaaaatgcatatgtatacacattcagatgaaaaaccatttaaatgtaccttatgcactggatcatttaatcgaaaagacaaGTTCAAAATGCATATGAAAGTTCATCATAATTGTACATTAGACGATATTAAAGAAAGTAATGTTCAGGATGATTTTATGCAAATTGAAATTGTTGATAAAACATTAATACCACCAACGAATACAACAATTGTGCGAAAATTACCAATTGTTGATAATATAAAAATAGATGATGATGATGATGATGAGGTTGTTGAAATTATCGAGTCCAATAAATAA
- Protein Sequence
- MCRSCLSTEKDLINLFNSQYDSNHTFWELFVICTNKSDATTVTETVSSENENEITIPKTLCVECLNDLKIAYNFRERCEKSNRIIRNMLKENLLCEILEFEQQNSVVGCPSTNYVMSERTFSRLASIQRDPKLNRPRKKWLIEQHQEENQIKGENLEIEIITESNFDNNLKYEFIGEDGFVHDVDDNDDDIVENDGTVEILETIEDLDTTEQSNTIEDLDTIEHLDTTEHLNTVEQLDSVESLENAESIVCIGNRSENVDSNIENLDNSLECVHEIKNVLHTQCIEDEDESYVEYFKTKNNEDKLMAKEMGMREPSMRNWFECEQCKKGFKMKQSLEKHIELSHNGKTLHLCNFCGKLCSQETSLKAHLLQHQGCRPFKCNECDKSYFTKNGLQNHQVMHADNKPEAKFLCSTCGKGFTTNQRLMVHTFTHTGERNFSCDLCEKSFATEFRLRSHRRIHTGERPYQCQECGLTFAQGNALKCHKRVHTGEKPYECKFCGKRFSQNTILKTHLTLHTGKTVKCPDCDKKFSRASYLILHKREHTGEKPYVCDRCPNRYKQKSHLDRHIDTHLGIKHKCNICKKEYSKQWSLKMHMYTHSDEKPFKCTLCTGSFNRKDKFKMHMKVHHNCTLDDIKESNVQDDFMQIEIVDKTLIPPTNTTIVRKLPIVDNIKIDDDDDDEVVEIIESNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -