Pfun011331.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- -
- Assembly
- GCA_027564355.1
- Location
- JANSTX010030321.1:28634-31553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00017 0.01 16.1 2.2 1 23 191 213 191 213 0.99 2 14 0.15 9.4 6.8 0.7 1 23 219 242 219 242 0.96 3 14 4e-06 0.00025 21.2 0.9 1 23 250 272 250 272 0.99 4 14 2.3 1.4e+02 3.1 1.6 1 23 280 304 280 304 0.89 5 14 0.018 1.1 9.7 1.2 1 19 323 341 323 345 0.91 6 14 2.6e-05 0.0016 18.7 3.6 1 23 351 373 351 373 0.98 7 14 2.2e-05 0.0013 18.9 2.4 3 23 382 402 380 402 0.98 8 14 1.5e-06 9.5e-05 22.5 1.6 1 23 408 431 408 431 0.98 9 14 0.017 1.1 9.8 1.6 1 23 623 646 623 646 0.92 10 14 1.5 93 3.7 0.7 1 23 762 785 762 785 0.87 11 14 1.1e-05 0.00066 19.9 0.1 1 23 791 813 791 813 0.99 12 14 2.4e-06 0.00015 21.9 3.2 1 23 818 840 818 840 0.98 13 14 1e-05 0.00065 19.9 0.4 2 23 847 868 846 868 0.98 14 14 0.00083 0.052 13.9 6.0 1 23 874 896 874 896 0.98
Sequence Information
- Coding Sequence
- ATGACAAAGTTTGCAACACAATTTGTCAATATTACTATGGAACCAGAATTTGTTATAGTTCGTGAAGGTCCAACACTTTTACGTGTACAAAATGAAAAACACATAACAGAAACAACATCAACAAAGTCATCAAAAACACAACCTAGTAATAATGGAAAAAATAACAAAAAAACATCTTCAAATCAGACAAGAATTACAAGATCGTGTAGTAAAATAATAAATTCGATAAATAGTAAGAAAAAGAATAAAAAATTAATTGTAGAAAATATAATAGAAAATAAAAAAATACAATCAAATCAAGTAAATGAAAAGGTTACAAAGAAAAAACGAGGTAGAAACAAAAAACCTAATTTAGAAAATAGTACAACAAATAATGAAATAATAATAAAATCTGAAAAACAGCAACAGGAATTCTTACAGGAACAGAATGGAACAAAGTTTTCCATTGACGATAATATTGTAAATGAATTAAATGAAAATCAAGTTAAAGAAAAATTAATTGAAAACCAGCAACATCAAATAGGTGTCAGTAAAAATATGGTAGAAAAAAAAATACAAAACAAATCAAATTTTAAGTGTTTAATTTGTGAAAAACTATTTGATTCAAAAACTGAGTATAGAAAACATTTAAAAATGCATAAAAGTGATATTTCCCATGAATGTGCTGTATGTAAAGAAACATTCCTAGATGTTGAAAAACTTTTTGGCCACATTCGTCGATACCATACTGTCGAAGAAACAAAATTATTTCAATGTAATTTATGCCAATTAACATTTAAGGAAATTGATTTGCTCGAAAGACATATGCGAACTCATTTAGATGTTAAACCAACATTCTATAAATGCACATTATGTTCAAATCGAATATTTGAATTAATTGATCATTTATTTGAACACATGACAGATAAACATAACATTATTAATAATAATCATAATAATAATAATGAACAACAGACTGTTCAAAATTATTCATGTAAATATTGTAATGAACTATTTACTGATAAAATGGAATTTATTGAACACGATAAACAACATTTAATATCAAAATTTTATCATTGTTATGAATGTGGTAAAGTATTTACATCCATACATAATTTATCAATACATAAACGTGTTCATAATAATGCCGATCGACCATATGGTTGTAATGATTGTTCAAGAAAATTTACACGTTCCGAAGATTTGCATACACATTTACGTATTCATAAGGGTTTATCGGTTTATGAATGTAAATTTTGTGATCGTATGTTTGCCCAATCGAAAAATTTAAGCAATCATTTACGTAAAATACATACCCATAACTTTAATCCAGATGATTTACTATTAATTGAATATGTTGTTAATGATAGAAATTATAAACGTATAATACATGATGAAACAAATGATTTATTTAAAATAAATTTATTTGATGACGATTTTAATCATACAAATAATGATGATAGTACACATATTGATGAACATATTATTGATAAACAAATTGATACAATAGAATTTGGAAAAAAAGATGACAATACTGGTGAAAAAATTGTTAATGATAATATAAATGTAAATAAATTTGATGATTTATGTAATAAATCAATATTTTCTAATATTAATAATAATGATTTTATAAATATGAACAATAAGAATGATATTAAAAATAATTATTTTATAAATTCTGTTGAACCACCGCCATTAATACCGTTTTCATCAAACATAACAAAATCATTAACAAAATTGAGTAGTACAATTAAATCATCACCAACAAATGAATTAAAATTATCATCATTAATAACTGAATCGTCATTAGTAGTATTAAATGAACAATTAAATCATTTACAACAACAAACGTTAAATATTTTAAAGAAAAATAATTTAATACGTAAATATAAGTGTCCTTTATGTGAATTAGTTTTTGTTAAAATGAAAAGTTTAGAGATACATTGTAAGCGTAATCATGAAAATCAATATAATTTAAATGAATTGAAAGAAATTGAAGAAAATGTTAAAAAACAAAATGAACAACAGAAGCAGATGGAAGAAAATGCAAGTGTTATTCATGACGAACATAAACTAGATGAAATAATGGTGTCAAaagaaataacaccatctccatcttctcattcgaaagattcatcttcaataacattactatcaccatcaccagtattattaacaccatcatcatcagcatcatcaccgtcatcatcatcatcactgataacatctttatgtaatcaaattttacccaattcaaaatcaAATACATTACAATTGAACGCTGAAACAAATGAATTGAAAACATTTGAATGTCCTTGTTGTGAAGATTTATTTGAATTAAAATCACAACTTATAAAACATTTAAAAGATGCACATGATGGTGAGAAACCGTATAAGTGTTCAGAATGCGAGATGACTTTTGCCAGACCAAATACATTAGCCGAACACGTTCGTGTACATCTGGAGAAACGTCATAAATGTTCATATTGTGGTTTAACATTTGTACAACAAACATCGTTACTAAAACATATTAAACGACATGAGGGTAAGGAATTAAATAAATGTAATATTTGTGATATACCATATAATGAATTAAAAGATTTGACACGACATATGCGAACACATGCCCAAGGGAAACCACATCAATGTACATTTTGTGATAAACGTTTTGCTCAATCTTGTGATAAAGTTAAACATATGAGGATACATACGGGTAAGTGCTATTTAATTTTTAGGCCCTGGGAACGAAGTTCCAAGGGTCTATTGTATTTGATTCCGTTCATGTAA
- Protein Sequence
- MTKFATQFVNITMEPEFVIVREGPTLLRVQNEKHITETTSTKSSKTQPSNNGKNNKKTSSNQTRITRSCSKIINSINSKKKNKKLIVENIIENKKIQSNQVNEKVTKKKRGRNKKPNLENSTTNNEIIIKSEKQQQEFLQEQNGTKFSIDDNIVNELNENQVKEKLIENQQHQIGVSKNMVEKKIQNKSNFKCLICEKLFDSKTEYRKHLKMHKSDISHECAVCKETFLDVEKLFGHIRRYHTVEETKLFQCNLCQLTFKEIDLLERHMRTHLDVKPTFYKCTLCSNRIFELIDHLFEHMTDKHNIINNNHNNNNEQQTVQNYSCKYCNELFTDKMEFIEHDKQHLISKFYHCYECGKVFTSIHNLSIHKRVHNNADRPYGCNDCSRKFTRSEDLHTHLRIHKGLSVYECKFCDRMFAQSKNLSNHLRKIHTHNFNPDDLLLIEYVVNDRNYKRIIHDETNDLFKINLFDDDFNHTNNDDSTHIDEHIIDKQIDTIEFGKKDDNTGEKIVNDNINVNKFDDLCNKSIFSNINNNDFINMNNKNDIKNNYFINSVEPPPLIPFSSNITKSLTKLSSTIKSSPTNELKLSSLITESSLVVLNEQLNHLQQQTLNILKKNNLIRKYKCPLCELVFVKMKSLEIHCKRNHENQYNLNELKEIEENVKKQNEQQKQMEENASVIHDEHKLDEIMVSKEITPSPSSHSKDSSSITLLSPSPVLLTPSSSASSPSSSSSLITSLCNQILPNSKSNTLQLNAETNELKTFECPCCEDLFELKSQLIKHLKDAHDGEKPYKCSECEMTFARPNTLAEHVRVHLEKRHKCSYCGLTFVQQTSLLKHIKRHEGKELNKCNICDIPYNELKDLTRHMRTHAQGKPHQCTFCDKRFAQSCDKVKHMRIHTGKCYLIFRPWERSSKGLLYLIPFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -