Pfun011171.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Penthetria funebris
Gene Symbol
bab1
Assembly
GCA_027564355.1
Location
JANSTX010006928.1:360-4049[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.1 3.8e+03 -2.4 0.0 14 28 94 110 86 112 0.69
2 3 1.1e-12 2e-09 36.9 0.0 4 45 445 486 442 486 0.92
3 3 0.084 1.5e+02 2.0 0.5 4 20 589 604 588 604 0.92

Sequence Information

Coding Sequence
ATGGGCGGTGGTAGCGAAGGACAAACATATTGTTTACGATGGAATAATCACAAATCAAATTTGGTCGAAATACTCGATGCACTAATGAAAATGGAATGCTATGTTGATTGTACCATTTATGTTGATGATCAGGTACAATTTAAAGCACACCGTGTTGTATTGGCAGCATGCTCACCATATTTTCAATCAATTTTACAAGATGTTCCCATGGATCATTGTAGCATCTTATTTCCTGGTGTACAAGCATTTGAAATGCGAGCACTTCTAGAATATATGTATACAGGTGAAACAAATGTTTCACAATCTCAATTACCAAGAATATTTAAAATTGCCGAACAATTGGAAGTAAAAAGTTTGTTTTATATGACTGATCTCAGAaataaattcaataaactagatgatacacaagaatacatatcatcacaaaatattaataataatataaataataatactagcagtaacaataataataataataatagtaataacaataatactattaataatagtaatgttagtaataataataaatcagataataatcatcaatcgtcaccaatcatatcaacatcaacaaatatatcatcagctcaaagtaatagtTCTTCACCACCATATAATTATAAATCGCCATATTCAAATATGTATCAATCGCGAAGTCCGATACCATTGGCAGCTGAACGATTAGAACGTCCATCACCACAATGGCCAATATCAACACATCATATATCGCCACCAATAGTACCATCACCATCATCATCACATTTGCAAAATGCTGCCTCAACTATGTTAAGTTCAGTTTATGAATCTGGTTCGGATATGAATCCATTGAAACGAAAAAAATTATCATCCATTTCTAGTATGTTAATGTCCAGGGATACACCAATTTTACGAAATGTATTAGCACAACCAAATGTTCCTGATtcttcacaagcagtgccattagtttgtcaaccatcaacgtttgatcgaattgaacaacagcacagtacacatcaacaactacaacagcagcaagaacaacaacaacaacaacaacaacaacagcagcaacaacaacagcaacaacaacaacaactacaacaacaacaacatcaacagcaacaacagcagcagcaacaacaacagagtagtcattctaatggtactgattattcaaataagTTACAGAAAATTAAATATGAAGAACCACATTCACCATATACAGATAAATCATTTGATGATGATCCAATTGAAACGTCACCGCACTACTCAAACGATTCACGTATAGCATCGTATGTTCCACAACAGAAACCAGAATGGAAACGATATAAACAATATACTAGATCTGATATTTTACAGGCAATTGAATGTGTTCGTAATGGTATGAGTGCATTACAGGCATCAAGACAATATGGTGTTCCGTCAAGAACTTTATACGATAAAGTTAAGAAATTGGGTATAACAACGGGTCGTCCAATGAATCGAACAATAAAACGAAGAAGTTCTAGTAATGGTGGTAGTCCAGCAGCATTTCCATATGGTATCAGTGGTACAAACAGTACATATAATCATCATGACAGTCAATCACATTCGCAACCTCATTTACATCATCATTTAGAATCGCCTAGTGATCGAGATCATTCTGATAATGAACGTAAACATCATTTATCAACAACTATACCACATCCAGCCGCAGCACTATTGGATGCAACATTTTTACAACATGCATTAGAAGCACGTGGTGGTGATATTGCCGGTCGTGAAGCATTACATGCTATGGCATTTGCGGCTGCTGCTCATGCTGCCGTTAATGGTTTGTCAACCAGTCCTGGTACACATGGTACGGCAAGATCGCCGAGCCCTAACATTTTAATGAAATATATGCGTCCTTCAAGTGCAGATATCGATAAAGAAAGTAAAAATCATCATCATGATTTAAatgatgaagaggatcatgttgaagatttgtcaatgagtaagaaaacattagatatttcgtcattaattcagctacaacaacaacagcaacaacaacaacaacaacaacaacaacagcaacagcaacaacaacaggaacaacagcagcagcaacaacaacatcaacaacagcaacaacagcaacaacagcaacaacaacaactacaacaacaacaacaacaactacagcttcaacaatctccgttacaacttcaggaacaacaacaccaacaccaacaacaccaacaacaacaacaagaacatacacgtgaacaacaacaacaaggtgttatagtaccacctatgacaacaaaaatttcacaacaaaGCAAAGATGATCTAAATGTTGTTAAACGAGAGGTAATCGCAACAGTAGATGATGACCCACATGATTAG
Protein Sequence
MGGGSEGQTYCLRWNNHKSNLVEILDALMKMECYVDCTIYVDDQVQFKAHRVVLAACSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGETNVSQSQLPRIFKIAEQLEVKSLFYMTDLRNKFNKLDDTQEYISSQNINNNINNNTSSNNNNNNNSNNNNTINNSNVSNNNKSDNNHQSSPIISTSTNISSAQSNSSSPPYNYKSPYSNMYQSRSPIPLAAERLERPSPQWPISTHHISPPIVPSPSSSHLQNAASTMLSSVYESGSDMNPLKRKKLSSISSMLMSRDTPILRNVLAQPNVPDSSQAVPLVCQPSTFDRIEQQHSTHQQLQQQQEQQQQQQQQQQQQQQQQQQQLQQQQHQQQQQQQQQQQSSHSNGTDYSNKLQKIKYEEPHSPYTDKSFDDDPIETSPHYSNDSRIASYVPQQKPEWKRYKQYTRSDILQAIECVRNGMSALQASRQYGVPSRTLYDKVKKLGITTGRPMNRTIKRRSSSNGGSPAAFPYGISGTNSTYNHHDSQSHSQPHLHHHLESPSDRDHSDNERKHHLSTTIPHPAAALLDATFLQHALEARGGDIAGREALHAMAFAAAAHAAVNGLSTSPGTHGTARSPSPNILMKYMRPSSADIDKESKNHHHDLNDEEDHVEDLSMSKKTLDISSLIQLQQQQQQQQQQQQQQQQQQQQEQQQQQQQHQQQQQQQQQQQQQLQQQQQQLQLQQSPLQLQEQQHQHQQHQQQQQEHTREQQQQGVIVPPMTTKISQQSKDDLNVVKREVIATVDDDPHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01168539;
90% Identity
iTF_01168539;
80% Identity
iTF_01168539;