Pfun013996.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- bab1
- Assembly
- GCA_027564355.1
- Location
- JANSTX010024076.1:480-2036[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-17 5.1e-14 51.6 0.0 1 43 28 71 28 73 0.95 2 3 4.8 8.9e+03 -3.6 2.8 6 23 166 185 164 187 0.69 3 3 1.3 2.4e+03 -1.8 0.5 13 21 296 304 294 304 0.86
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGTTGGAATACAAATCAAAATTTAATACATCACTTGCGATTTCGTGAACGTGGACCATTGAAATCGTGGCGTCCCGAAACAATGGCTGAAGCAATTTTTAGCGTGTTAAAAGATGGTCTATCATTATCGCAAGCAGCAAGAAAATATGACATTCCATATCCAACATTTGTATTATATGCTAATCGAGTACATAATATGTTAGGTCCATCAATTGATGGTGGTACGGATTTAAGGCCAAAGGGGCGTGGACGACCGCAAAGAATATTGCTTGGTATATGGCCAGATGAGCATATAAAAGGTGTTATAAAGACTGTTGTATTTCGTGATGCAAAAGAATTTAAGGATGAAGCTATGCATTTAGCATATGGAAGGCATTCGCCGGTATATCCATTTCCCGATGGACAAATGGGCTTCCCAGGAACACCATGTAGCAATGGTTTAGGTTCACAACAACCCGGTTCAGAATCATTATCACctgaagctgcagctgctgttgctgctgttgttggtttgcgtcaacaaaTGCAAATGGCAGCGGCTGCACATCATCCGGATGCTGTAAATTTTAATTTATCACAACATTGTGTTAATATGCATTCAaataataataataataataataacagtaatggtggagcagctgGTGGTAGTATACCAATGCCAAAATTAGGCTCACCTGCAGCATCCGGTCAATTAGGTAATAATAATGGTGGCAGTGGTGTACCTATACCCAGACTTGCATCACCAGCTATACCTGGTATGTCAGTAAATAATTCTACACATGGATTAAGTGGATTAGCCGGTTTACATATAATGCAAAGTATGACTGGTGGTGGTGGTGGTGGTGGTAATGGTAATGGTGGTGGTTCATTAATGTCAGGACAAACTAGTCAATCTCGAGTTACAATATCTCCAGCACATGGAAATTTATCTAGTAATTCATCAAATATAAATAATATTCATAATAATACGTATAATAATAATTCATCATCCCAAGGTCATACAACAAATGTAATGGCACATATAACATCATCGACAAGTAATAGCAATTTAAATATATCAAGAATGGATTCACCATCAAATTCTGCCCATGATTTACGTATGAATAGTCCAGATGATGATTCAATGCATCATTCACCATTAGATATATCACTTGAATCGGCTGGTGTTAATTTGGCGGTAGGTGTGAGTGGTATGTCATATAAATCGTCAAGAGGTTATTCATCATCACCACGTTCAGATCATTTATTCCAAGAAGATATTACCGATTTTGTAACAGCACAACGATGTCCATCACGTTTGAATAATTTTAAAGAACCAGCTGGTGGTATTAAAATTGAACCAATGACGGAATGTAGAGGTGATTGA
- Protein Sequence
- MWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAIFSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKEFKDEAMHLAYGRHSPVYPFPDGQMGFPGTPCSNGLGSQQPGSESLSPEAAAAVAAVVGLRQQMQMAAAAHHPDAVNFNLSQHCVNMHSNNNNNNNNSNGGAAGGSIPMPKLGSPAASGQLGNNNGGSGVPIPRLASPAIPGMSVNNSTHGLSGLAGLHIMQSMTGGGGGGGNGNGGGSLMSGQTSQSRVTISPAHGNLSSNSSNINNIHNNTYNNNSSSQGHTTNVMAHITSSTSNSNLNISRMDSPSNSAHDLRMNSPDDDSMHHSPLDISLESAGVNLAVGVSGMSYKSSRGYSSSPRSDHLFQEDITDFVTAQRCPSRLNNFKEPAGGIKIEPMTECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -