Pfun015296.1
Basic Information
- Insect
- Penthetria funebris
- Gene Symbol
- ab
- Assembly
- GCA_027564355.1
- Location
- JANSTX010002326.1:1077-2693[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.8e-09 1.8e-05 24.2 0.0 5 43 383 421 382 423 0.90 2 3 0.00013 0.25 11.0 0.0 6 35 432 460 429 468 0.85 3 3 2.2e-14 4.1e-11 42.3 0.0 4 41 489 526 487 529 0.91
Sequence Information
- Coding Sequence
- ATGTGTGGTTTAATGCAAAAATTGAAATATATTAATTACTCTGACGATATTGCGTCATTACATGTAAATAGTTTGCAGGACAAAAAAAATGCAGACGTTAATATTATTTGTGATAAACGTAGCTTTTATGCGCATAGATTAATTCTGTCAGCCAGTAGCTCTCTATTTGAAAAAATTCTAAAAGGAACAACTAAAATTGAAATGACGCCGTTATTAACAGTTATTTTACCTGATCTAGAACCGAATCTATTTGCAGTTGTTCTTGAATTTATATATAAAGGAGAAATATACGTACAATCAACAGATTTTCTAAAATTTATGGATTATTGTGAATTTTTGCAAATTAAAAGTTTAATAAACGAGCACACAGCTACGTCAAACAATGATATTATTCAACAATCAAAAATCATAGTAGAAGAAGATTTGTGTTTCTCTGAAGAAAAGTCTAATATCATTGATGATAATTCAACGAATAAAGAAGATAATACATGTATTAAATCACAATGCCGGAAAATTTACGATAATACTAACAGCGCATTAAACACTACTAGAATTAGTCAAGATTTGAGTTTCGATGATATCATGAAAGACAATTATAAATTTAGGCCAAGTACAAAACCGATGGAACATAAAACAAATCTTCGAAAtgagaataattcacgttataagtttttagttttaagcagtaatgataatatacatgataatgataaagaaaattcggaacattgtaaaacggagttcaaaaatacaaaggaacatctaataaaatcattacaacactcagaagatgatgtaactaatcataacgataatatactcagcctgcccgatgatgatactatcgatatgtttaattatgattgcgatggtatagttgttgccaatgtcgacaatgataatgatgatgataatgataatgatgatgataaagttgatgacgataacgattattataatgctgatgttgatgactacgatgatgatctgaataaaaataacagagacgctgaagatgtgacagataccaaacaaatttctaataatttaaataatattGTACGTTGGAATAGCTTAAACAAAAAGTTAATGCAAAGTAATAAAGCATATGACAAAACTGTTAACAGTAATTCGAAATATAAATATATTAGCGAAGCCATTTACGAAGTTGTGAAGCACGGTTCATCAATTCAAAAAGCTAGTAATAAATTTGCAATACCATCAACAGTTTTATGGAGGGAATTGAAAAGAACGCCAACTTATAATCCACAAAAATCTAACCAGACGAATAGACAAGCAGCAATAAATGCACTCGAACGTGGTGAAAGTTTAAAAACTGCGTCAATTAAATATAAAATACCAATATCAACTTTGCATCGTGACAAAGTTCGATTACATGCACAAGGTCGATTACCAAGTGATTGTAAATTAATAAAACGCAATGTTGATCCATCTTTTCCAAAGCGTTTAAAACTAGCCCTTGAAAGTTGCATACAAAATGGATTGTCTCAAAATCAAGCTTCCATATCGTATAATATACCAAAAACAACATTATGGAGATATTTGCAGCAGATTTATAGAATTGAATTACTTGCCACTGATTTAAAACCTGTGTAA
- Protein Sequence
- MCGLMQKLKYINYSDDIASLHVNSLQDKKNADVNIICDKRSFYAHRLILSASSSLFEKILKGTTKIEMTPLLTVILPDLEPNLFAVVLEFIYKGEIYVQSTDFLKFMDYCEFLQIKSLINEHTATSNNDIIQQSKIIVEEDLCFSEEKSNIIDDNSTNKEDNTCIKSQCRKIYDNTNSALNTTRISQDLSFDDIMKDNYKFRPSTKPMEHKTNLRNENNSRYKFLVLSSNDNIHDNDKENSEHCKTEFKNTKEHLIKSLQHSEDDVTNHNDNILSLPDDDTIDMFNYDCDGIVVANVDNDNDDDNDNDDDKVDDDNDYYNADVDDYDDDLNKNNRDAEDVTDTKQISNNLNNIVRWNSLNKKLMQSNKAYDKTVNSNSKYKYISEAIYEVVKHGSSIQKASNKFAIPSTVLWRELKRTPTYNPQKSNQTNRQAAINALERGESLKTASIKYKIPISTLHRDKVRLHAQGRLPSDCKLIKRNVDPSFPKRLKLALESCIQNGLSQNQASISYNIPKTTLWRYLQQIYRIELLATDLKPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01168559;
- 90% Identity
- iTF_01168559;
- 80% Identity
- iTF_01168559;