Basic Information

Insect: Penthetria funebris
Gene Symbol: -
Assembly: GCA_027564355.1
Location: JANSTX010039762.1:825-9488[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.2e-12 5.9e-09 35.4 0.0 1 39 425 464 425 468 0.90

2 4 2.6e-14 4.8e-11 42.1 0.1 1 39 479 517 479 520 0.94

3 4 8.7e-18 1.6e-14 53.2 0.0 2 45 535 579 534 579 0.96

4 4 8.2e-19 1.5e-15 56.5 0.0 1 42 586 628 586 630 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.2e-12	5.9e-09	35.4	0.0	1	39	425	464	425	468	0.90
2	4	2.6e-14	4.8e-11	42.1	0.1	1	39	479	517	479	520	0.94
3	4	8.7e-18	1.6e-14	53.2	0.0	2	45	535	579	534	579	0.96
4	4	8.2e-19	1.5e-15	56.5	0.0	1	42	586	628	586	630	0.96

Sequence Information

Coding Sequence: ATGCCAAGGTTATATCGTAGTGTCCACATTTTAGTATTCATTTCATACTATCTTAATAGCAATTTTACAATGGGTTTATTACGAACGGCAGAACAATTAAAAATAAAAGGTCTATGTGATACAGAACAGAAAATTGATCAATTACAATCGTCGACGCCAATAAAACGTAGCCGTACAAAACGATCAAGATCACCaagtgatggcggtgataatgataatggtgatggaggtAATGGTAGCAGCAGTAGTTTAATGAATGTTTCAATGGGATTTTTAGATTTTGCACCAGAACCACCTGCACCATCGGCAACACCCGTAACAGAACATATTGATTTGAATTGTACACCTAGTAATGATACACGTGATTTATCAAATTCGTCAATACCAAATGATGAGGTGAATATAAAATTTGAAACACTAAGATCTATGGATCCTGAAAATTTAGAAATTGATAACCGTTCCAATATAACACCACAGTCAACTACAAAAATACATCATCAATATCAATTACAAGATAATCAAAAAAGTACACCGCCACATCAATTAGTTCAACAATTACCACCTTCACCATTGAATACATTAATTGTGAAAACGGATAGCCAAAGTCAGCACCATGTCCAATATTTACAGAAGGAACACCAACAATCACAACAACAGCTTCAATCGGAACATTTGTTGCAATTACAAAAGCAAATAAAAATTCAATCACTGCCGTCAAATACATTTATTGTTAAAAGAGAAAATATTAATCAACAAACATCTCATATGATAAATACAATAATTTTAAAATCTGCACGAAATAatcaacaatcacaacaacaagaattacaacaaaatgaacaacaatcgcaagaaagacaacaaatacaatcacatacacaaattatgacaacagttgcatcatcaacaacttcaacatcatcatcatcatcttcatcatcattatcgtcgtcaacatcaccaatatcaccaaaatcaccagcaacagatgtcaaatcacttattgtaacatcatcatcaccactaacaataacaactccaatgGAAATTGATATTAATAATATAAAAAATGAAAGTGCAATGATAATAACACCGGAAATTGTTAGTATGATGGCATCTGGTCAATTGGTTGACATGTATAATTCAGAATCAAGTGAAGATTCAAAATTGAATTTAAATGGTTCTTCACCTACCGATAATAATTCACCACAATATACAAATTTAACAAATTTACAAGATAGTAAATCGACAATGAGTTTCCCGAAAACATGGACCCAAGAAGATATGGACAGTGCATTGGATGCATTACGTAATCATAATATGAGTTTAACAAAAGCATCCGTTTCATATGGGATACCGTCAACAACATTGTGGCAACGAGCACATCGTTTGGGCATTGATACTCCAAAAAAAGAGGGACCAACAAAATCATGGAGCGAGGATGCATTAAATAATGCATTGGAAGCATTACGTACTGGTCAAATATCAGCAAATAAAGCCTCAAAAGCATATGGTATACCATCATCAACGTTATATAAAATTGCAAGACGTGAAGGAATACGTTTGGCGGCACCATTTAATGCGGCACCCACAACATGGACAACCGATGATTTGGAACGGGCATTAGAGGCAATACGTACCGGTCACACATCGGTACAAAAAGCTAGTACAGAATTTGGTATTCCAACAGGTACATTGTATGGACGTTGTAAACGTGAAGGTATTGAATTATCAAGGTCAAATCCAACACCATGGTCAGAGGATGCTATGATGGAAGCATTGGATTCTGTTAGAGTTGGTCAAATGTCCATAAATCAAGCGGCTATACATTATAATTTACCATACAGTTCATTGTATGGTCGATTTAAACGTGGAAAATATGATATTTCAATAGAAAATGTGTCAAATTCACAGATGGATCAAAGTCCAGATAATTCGtttcaatatagtcctgcaccaagtactcagcaaacacagcaacaacaacaagtacaacaacagcagcaacaacaacaagcacaacaacagcaacagcaacagcaagtacagcaacagcaagtgcagcagcagcaacaagtgcaacaacaacaacaacaagtgcaacaacatcaacaagttcaacaagtacaacaaattcaattgcaacaaattcaacaaatacattcaccaatattagcatcttcaccatcattgcaacaacagcaacagcaccaacaacagcaacaactacaacagcaacaacatcagcaagaattacaacatcaaaatcaaaacaatcaacaaattttccatcatcatcataatctacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcaacatcaacagttacaacaacaacatcaacaaccaccacatcaacaaatgactgaatatgttataaaaattgaaaacagttga
Protein Sequence: MPRLYRSVHILVFISYYLNSNFTMGLLRTAEQLKIKGLCDTEQKIDQLQSSTPIKRSRTKRSRSPSDGGDNDNGDGGNGSSSSLMNVSMGFLDFAPEPPAPSATPVTEHIDLNCTPSNDTRDLSNSSIPNDEVNIKFETLRSMDPENLEIDNRSNITPQSTTKIHHQYQLQDNQKSTPPHQLVQQLPPSPLNTLIVKTDSQSQHHVQYLQKEHQQSQQQLQSEHLLQLQKQIKIQSLPSNTFIVKRENINQQTSHMINTIILKSARNNQQSQQQELQQNEQQSQERQQIQSHTQIMTTVASSTTSTSSSSSSSSLSSSTSPISPKSPATDVKSLIVTSSSPLTITTPMEIDINNIKNESAMIITPEIVSMMASGQLVDMYNSESSEDSKLNLNGSSPTDNNSPQYTNLTNLQDSKSTMSFPKTWTQEDMDSALDALRNHNMSLTKASVSYGIPSTTLWQRAHRLGIDTPKKEGPTKSWSEDALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTTDDLERALEAIRTGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALDSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDISIENVSNSQMDQSPDNSFQYSPAPSTQQTQQQQQVQQQQQQQQAQQQQQQQQVQQQQVQQQQQVQQQQQQVQQHQQVQQVQQIQLQQIQQIHSPILASSPSLQQQQQHQQQQQLQQQQHQQELQHQNQNNQQIFHHHHNLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQLQQQHQQPPHQQMTEYVIKIENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -