Pnig020077.1
Basic Information
- Insect
- Pentalonia nigronervosa
- Gene Symbol
- -
- Assembly
- GCA_014851325.1
- Location
- scaffold:165152-172771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.7 4.3e+02 2.3 0.7 2 10 142 150 141 152 0.91 2 16 0.03 3.4 8.9 0.1 2 23 165 184 164 184 0.87 3 16 6.1 7e+02 1.6 0.1 1 23 196 219 196 219 0.87 4 16 0.28 33 5.8 0.5 1 20 263 282 263 284 0.94 5 16 0.21 24 6.2 0.7 3 17 291 305 290 311 0.75 6 16 0.13 15 6.9 0.6 2 23 322 344 321 344 0.94 7 16 1.3e-05 0.0015 19.4 0.4 2 23 351 372 351 372 0.97 8 16 0.002 0.23 12.6 0.5 1 23 378 400 378 400 0.95 9 16 6.7e-05 0.0077 17.2 2.3 1 23 406 428 406 428 0.99 10 16 0.25 29 6.0 0.2 2 23 485 507 484 507 0.91 11 16 0.0043 0.49 11.5 1.5 1 23 518 540 518 540 0.97 12 16 0.024 2.7 9.2 2.6 1 23 615 638 615 638 0.97 13 16 0.024 2.8 9.2 0.7 1 23 651 674 651 674 0.95 14 16 2.3e-05 0.0027 18.6 1.9 1 23 684 706 684 706 0.96 15 16 0.077 8.9 7.6 0.0 3 23 792 812 791 812 0.97 16 16 0.049 5.7 8.2 0.1 2 23 826 847 825 847 0.94
Sequence Information
- Coding Sequence
- ATGGGAGCGGGCGCGACGTGCACACAGACCGCCAACGGCCATCCGGTGGTGTTGATGCCGGTGAACGTGGGACCTTCGAAACCGGAACAACGGGTGTACTTCCGGAAGCCCCGGAAACGTCGCCACTGCACGATGTCGCGCCGTCGCCGAACGCCGTTCGACCCCTCCAATCAAGTGATCGTTCACTTCGAACCGGACGGCAGCGGGAGATACGAAGTGTTCGGCGGCGGCGGCGGCGAAGAGTCTGTCGCGGGACAAAAGTCCGCCGGACGCGCCGCGGACGCGAACCGCAAGGGCAGGCCCAAGGGATCGAAGAACAAGTGGCCGCCGTCGTCGGCGGCGGCGGCGTCGACGTCGCTGTCCGGCTCGTTCGACTACCGGTGCGGCAAGAGGTCGCTGACGTACGCGTTCGCGGGCCCGGTCAAGTGCAAGTCGTGCGATCGGACGTTCGACGGCGACCCCGTGGCCCACTGTCTGCAGCACCACAGGTCCGTGTGTCCCATATGCGGCCGCACGTACCGGCCACCGCTGAACGCGCACATCAAGTCGCACGGTACGCGGCACGTGTCGCTGACCGTTTCGTGTTACGAGTGTTACGCGTGCAAGGAGAAATTCGGCAACAGGCCGATCATGGCCGAACACGTGCGGTCCGATCACCGCGAATCCGCCGCCGCCGCCGCCGAGTGTTCCCTGTGTGGCGCCGCCGCGTTCGAGACCGTCGAAGCGGCCGTCGACCACCTGGTGGACGCGCACTGTCCGCGCAAGACGTTCAGCCACCCGGCCGTGTACCGGTGCCGGATGTGTCTGGCCGGGTTCAAGAGCCAGATCAACGTGCTGCGGCACGCGTGCAACAAGATCAAGTCGCCGTATTGCGCGCAGTGCGGCAAGACGTTCCCGTCCAAGATGCGGTACGCGTTCCACCTGCAGTTCCACGAGCACCCGAAGTGGGCGACCATGCACCTGCACTGCGACCTGTGCCTGGCCGAGTTCGACGACGAGTACCAGCTGTACGATCACATCCGGTTCCGGCACGAGCTGCACGACAAGGCGGTGTGCGAGGTGTGCGGCCGGACGTTCAAGTCGTCCATGGGCCTGAACATCCACCGCCGGTATCACAGCGGATCCCGCGACTTCGCGTGCGGCTCGTGCGACAAATCGTTCCTCAACAAGTCCACGCTCCGGGAGCACGAGATCTCGCACATGGACGTCAAGCCGTTCCAGTGTCACATATGCGGCCAGTACCTGAGCCGCGCGTCCAGGCTCCGGTCGCACGTCAAGACGCACCGGGCCGCCGAGTCTACCGACCAGACGTGTTACGGGTGCGGCAGGTGCGGTTACGTGGCTCCCAACCCGGTCGCCGTCGCCGAGCACGCGGACAAGCAGCACTGCACCGACGACACCGCCCGTCCGGCGGCCGACGAATGCTACGCGATGCAACTGTCGTCGGTGGTCAAGTGCGAGTACTGCGACTCGACATACCTGGACGCGGTGCACCTGAACATGCACAGAGAAGCGGCGCACGCGAACGGAAGCGCCGGCGACGCCGAGGCGTTCATCTGCGTCGTGTGTTCGTCCACGTTCAGCACGTACTCCAGGCTGACCACGCACAAGCTGACGCACGGCATCAACATGGAGTCCGCCTGCAGCGCGCCCGTTCAGCAGCAGCAGCAGCAACCCGACGAGGACGATCCGACGCGGTCCGACTCGCAGGACGACGGTTCGATGCCGGACCGGTTCGAAATACCGCAGTTTTTCTCCTGCGAGTACTGCTCCAAGAGGTGCTTGCACTACACGTACTTTTGCCTGCACCGGCGACTCAAGCACCCGCCCGGCGTGCAGACGCACACGTGCGACATGTGCTCGGTGGACTTCAAGACGTCTTGGAGACTGTCGTACCACAGGAAAACCGTGCACGACAAACCGGTGATGGACGAGAAGCCGGCCGAGAAGTACAACTGCACCGTGTGCTCCCGGCAGTTCGTCAAGATAGGCGCGCTCAACCTGCACAAGACCCGCACGCACATCGACGTGGTCGGCGACGTGTGCAAGTACCTGTGCCACCTGTGTGGCAAGTTTTTCAGCTCCGAGCTTTCGCTCAGGGCGCACGTTAAGACGCACGACGTCGGCGTCGGAGGTGGTGCGCCCGCACCGGCGCAGATGACGGTGCTCGGCGGCTGCACGGGCACCGGTGATCGCTCGCGCGACGACAGCAACTACGGCGACCGCGCCGAACCCGCCGCGACCGCGCCGCCGCCGCCGCCGCCGCCGCCGCAGAAGACGGTGCAGACCCGGCCGATTCACTGGCGCCGCACGTACCGGAAACCGACGGCGGCCGCCGCTGTCCGCCCGGCGGCGACGTCGGTCAAGAATTTGTGCCCGTACTGCGCTCGGACGACCGACGACAAGGCGGCGTTCATCGAGCACGTCAACGGTCACATCCGCCGCATCAAGCCCGCGTCGCCGGCGGCCGGCACCGTTTGCGAGCTGTGCGACGCGCGTTTCGGCGACTCGACCCGACTCAAGTACCACCTGGACGGCCACGCGAACGCCAACCAAGCTCTCCTGTGCAGGGCCTGCTACTCGCCGTTCCTGTCGTCGGCCGCGCACGACGCGCACGTGGCCGCGAAATGCCCGAACGCTACGGCCGCGGCCTACTGGCACGTCCCCGTCGGCCCGTCCGCCGCCCCGCAGTCCGTCGCCCGTCCGCTGATCGTCGACTGTTCGGAGATATTCGGCTGCAAGCGGCGCTGCGCCGCCGGCGACACATCGCCGCCGCCGCCGCCGCGGAAACCGGTCGAGCCAGACGGCGACGGACCGCTGGAACCGTCCGCGCTCGACGAGCTCCTGGCCTCTCTGGACGCGATCGATTACACCCAATCGATCGTCGACTCGCGACCGCCGGACGACATGTCGTTGGACGCGATTTTCGACAGCATCTCCTCCGCGAATTGA
- Protein Sequence
- MGAGATCTQTANGHPVVLMPVNVGPSKPEQRVYFRKPRKRRHCTMSRRRRTPFDPSNQVIVHFEPDGSGRYEVFGGGGGEESVAGQKSAGRAADANRKGRPKGSKNKWPPSSAAAASTSLSGSFDYRCGKRSLTYAFAGPVKCKSCDRTFDGDPVAHCLQHHRSVCPICGRTYRPPLNAHIKSHGTRHVSLTVSCYECYACKEKFGNRPIMAEHVRSDHRESAAAAAECSLCGAAAFETVEAAVDHLVDAHCPRKTFSHPAVYRCRMCLAGFKSQINVLRHACNKIKSPYCAQCGKTFPSKMRYAFHLQFHEHPKWATMHLHCDLCLAEFDDEYQLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHSGSRDFACGSCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHRAAESTDQTCYGCGRCGYVAPNPVAVAEHADKQHCTDDTARPAADECYAMQLSSVVKCEYCDSTYLDAVHLNMHREAAHANGSAGDAEAFICVVCSSTFSTYSRLTTHKLTHGINMESACSAPVQQQQQQPDEDDPTRSDSQDDGSMPDRFEIPQFFSCEYCSKRCLHYTYFCLHRRLKHPPGVQTHTCDMCSVDFKTSWRLSYHRKTVHDKPVMDEKPAEKYNCTVCSRQFVKIGALNLHKTRTHIDVVGDVCKYLCHLCGKFFSSELSLRAHVKTHDVGVGGGAPAPAQMTVLGGCTGTGDRSRDDSNYGDRAEPAATAPPPPPPPPQKTVQTRPIHWRRTYRKPTAAAAVRPAATSVKNLCPYCARTTDDKAAFIEHVNGHIRRIKPASPAAGTVCELCDARFGDSTRLKYHLDGHANANQALLCRACYSPFLSSAAHDAHVAAKCPNATAAAYWHVPVGPSAAPQSVARPLIVDCSEIFGCKRRCAAGDTSPPPPPRKPVEPDGDGPLEPSALDELLASLDAIDYTQSIVDSRPPDDMSLDAIFDSISSAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -