Basic Information

Insect: Pentalonia nigronervosa
Gene Symbol: BCL11A
Assembly: GCA_014851325.1
Location: scaffold:10210-42082[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.062 7.2 7.8 2.4 1 23 197 220 197 220 0.97

2 6 4.1e-07 4.7e-05 24.2 1.1 2 23 564 585 564 585 0.98

3 6 7.7e-06 0.00089 20.1 6.4 1 23 591 613 591 613 0.99

4 6 1.6e-07 1.8e-05 25.5 2.9 2 23 971 992 970 992 0.97

5 6 1.1e-05 0.0013 19.6 3.3 1 23 998 1020 998 1020 0.99

6 6 7.2e-05 0.0083 17.1 0.4 1 22 1028 1049 1028 1049 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.062	7.2	7.8	2.4	1	23	197	220	197	220	0.97
2	6	4.1e-07	4.7e-05	24.2	1.1	2	23	564	585	564	585	0.98
3	6	7.7e-06	0.00089	20.1	6.4	1	23	591	613	591	613	0.99
4	6	1.6e-07	1.8e-05	25.5	2.9	2	23	971	992	970	992	0.97
5	6	1.1e-05	0.0013	19.6	3.3	1	23	998	1020	998	1020	0.99
6	6	7.2e-05	0.0083	17.1	0.4	1	22	1028	1049	1028	1049	0.97

Sequence Information

Coding Sequence: ATGAGGATTAAAATGCCCGCAGTTCGTATCGCACAAGCGGATACGGACCCGACACATAGCACCAGCGGCACCGATCAGGTGGACCTGCTGACGTGCGGCCAGTGTCAGAGAGTGTTCCTATTGTCGGACATATGCCGGTTCGTACAGCACAAGATGACCGGTTGCAGCAAGGACTCGCTAGCTGCCAACTGCAACAGTGGCAGTGGCGACGACTACGCCGGGCCACCGCCGCCTCCACAGCCGTCACTCGACAACGGTCTGTCGGTGGCCAAGTCGAAGTCACACAACCGGTCCCAGTCACCGGCGGGAGCCGACGACTCAACTACGCACCACCATCATCATAATCATCATCACAGGCGACCACCGCCGTCCAGTACGCCCAAGCGAACGTCCGACCGAAACAACGGTGGCGAAGACGGCACCGCAAGTTCAGAGGACGAAAAGTCCAGCGCCACTGCCGTCCCCAAGAGCGGACGGGTAAAACAGGGATCCGAGTCATCCGAGGACTTGGGCTACAAAAAGTCCAACCGCTCAGCGTTGTCCTGCGTCGACGCCGAATCCAACACCACCAACTCGGAGCCCAGCAGTTTCGTTTGTTGCACGTGCAAAGCGAGGTTCAATTCGTCGTGGAGACTTCTGCAACATGCTCAGACCTCACACTCGATGAAGATCTACACAGATGGCACGCCATCGCCAGTGTTGCAGTCCAAGAACAACTCGTCGTGCTCTTCGTTGGGATCGTCTGGATGCTCGAGCGGCAACACATCGTCACTGCCAGGCATGTCGGTCCTGCCATTGGCCCTGGGCATGCCTCCTTCTCGGATGAACATGCACACCCATCCACCACCACCACCGCCGCCGCCGCCCACGAGTACCGGGCCACCGTCGATGGTTGACAACAACCCTATGTCTATGCCTATGCACAACCCTTTTGCTGTTGGAGGCTTGCTTAGGATGCCGATGGGCGAGCCTCCCCAGCGTCCGTCCCCGTTCCCCGGGACGTCTCCCATCGGCAACCCGCCGCTGTTTGGGCGGACGTCCAGTCACCATCAAGACCACCAGTTTCGCATGGAGCAACTCATGTCTGAACAGTTTAGGCTCAATCAGCAGCAGCATGGGCTGGGTTTCGCCGTGGCAGTGGCCGCGGCAAACGCCATGCCCACGTCACCGTTCCCAGGGCTAGCCGCCGCGGCCGCAGCCAACGATCGGAACAATCCTAGACATCCAGCGCCAACGTTACCAGCCCTAAATCTCGATCCGCAGATGGATTTTTACTCGCAGCGATTGCGGCAACTCGCAGGTACCACTAGTCCTGGAGCTGCTACTGCACCAAGTTCGTCGCCTTCGCCGCGAAAAATGACGCCACCTTTTAGCAGCCCCAACAACAACAACAACAACCACATCAACAACAGCATGATGTCGACATCGGCAGCCGTGACGACGGCGCCGCAGACTAACACTACCGTCGCCGCAGCAGTCACTGTCGGCTTAAACAACAACAACAACAACAACAGCAATGTGAGCAACAACAATTCGATCGAGTCACCATCTGATCAAGACCGAATCGTCGGCGACACGTCCAGGCACACGCTTGACCTGTCGTCTAACGCGTCCAAGGACAAGACGTGCTATGACATAACCAGTCAACCACAACAGCACCAGCAGATCGGTGAGGAGGAGAAAACTCGCGAGTGTGAGTACTGTGGAAAGAAGTTCCGGTTCCTGAGCAACTTGATCGTGCACAGGCGTACGCACACCGGAGAAAAGCCGTACAAGTGTTCGGTGTGCGATCACGCGTGTACGCAGAGCTCCAAGCTGAAGCGGCACATGAAGACACATCGCCGGTCGAACCGGGGAAACGGGCTGGCCGGTGGCGAGTGTGGGACAACTGCCAATGGGGTGGATACGAGCTCGACACCGGACATAACATCCAACGATGACGACGAGGATGATTCCGAAATAGACGACGATGAGGTGGAAATCGAGGAGGAGGATGATGGTGATGAAGACGACGCTGACGAGGATGACGGTGATGAGGACGACGAAGAGGAAGAGGAGGAAGAGGAGGAGGACATGGAGCTGGAAGACGAGGATAACGATGAGAACGACGAGGGAGGTGACGTACCAGAGGACCTAACTACCAAGTCAACGTCGTCGGCCGAACACGACAAGAAGCGGGGTAGCAACGGTTCCACTCGTACATCACCCGAGAACACGCCCGGTGACCGCGTACCGCAACCGCTGCCGCCGAGCTCTCTGGTCGGCGAGCTCATGAGCAAATTTGGCTTGAGTAACATCCAACAGTATAGCGAAGCGTACAAGCAGGCGCTCAAAGAGTCATCGTCGCTGCTGCCGCCACAATACAGAATCCGGCGGAAGGACAACTTCCGGTTGTCGCCATCCATCATACCGGACAACAATAACGGTTCGGCAAAATCAGCGAATCCATTGCGCAACCTGGAGAACGGGCTCGGCGACAAGGCGGCGGCAGACATCCGGTTCCGTGAGGAACTTACCAAGAACCTTATTGCGGCCGGCCAGAACCCGCTTGATCTGGTGGGTGCGCACCATGGAATTTTTGGCCCGGGTTCCGCTTTTGAGAACCCTTTTGATCAGGCCTCCAAGAGGCTGAAGCTCGACACCGATAACCCACACCACCCGCTGCTCAGCCGGGAACGACTGTACGCGGCTAACATGTGGCTCCCGGCCATTGCCGCGCACCACCGGGGTGAGTCGTTTCTGAGTGGACTTCCGGGAAAGCCACCGTCGGCCGGTAGCGGCGTCGGGGAACCTGTCAGTGGTGGTGGAAGTGGTGGTCGTTCGAAACCGGGTCCCAGTTCGCTCTCGGCGGCGCTGAACCTGCAGGGATTGCAGGGGGGACACGCCAAGAAAGAGTCGCGGCGCAACGACACGTGCGAGTACTGCGGAAAAGTGTTCAAGAACTGCAGCAACCTGACGGTGCATCGGCGGTCACACACCGGCGAAAAACCGTACAAGTGTGAGCTGTGCTCATACGCGTGCGCTCAGAGCTCCAAACTGACCAGGCACATGAAAACGCACGGGCGCCTGGGAAAGGACGTGTACCGGTGCCGGTTTTGCGAGATGCCGTTCTCGGTGCCGTCCACGCTTGAGAAACACATGCGTAAGTGTGTCGTCAACCAGAACATAAAGCTGGAGGGCAGCCAGTATATCAAGATGGACGATGGTTCCAAGACCGAGTCCGGTGGTGGTTACATTCTACCGCCGTCTTCCTTGGTCGATGACGAGTCGTACAGCAGTTCGATCGTTTCAAAAGACAACACATGA
Protein Sequence: MRIKMPAVRIAQADTDPTHSTSGTDQVDLLTCGQCQRVFLLSDICRFVQHKMTGCSKDSLAANCNSGSGDDYAGPPPPPQPSLDNGLSVAKSKSHNRSQSPAGADDSTTHHHHHNHHHRRPPPSSTPKRTSDRNNGGEDGTASSEDEKSSATAVPKSGRVKQGSESSEDLGYKKSNRSALSCVDAESNTTNSEPSSFVCCTCKARFNSSWRLLQHAQTSHSMKIYTDGTPSPVLQSKNNSSCSSLGSSGCSSGNTSSLPGMSVLPLALGMPPSRMNMHTHPPPPPPPPPTSTGPPSMVDNNPMSMPMHNPFAVGGLLRMPMGEPPQRPSPFPGTSPIGNPPLFGRTSSHHQDHQFRMEQLMSEQFRLNQQQHGLGFAVAVAAANAMPTSPFPGLAAAAAANDRNNPRHPAPTLPALNLDPQMDFYSQRLRQLAGTTSPGAATAPSSSPSPRKMTPPFSSPNNNNNNHINNSMMSTSAAVTTAPQTNTTVAAAVTVGLNNNNNNNSNVSNNNSIESPSDQDRIVGDTSRHTLDLSSNASKDKTCYDITSQPQQHQQIGEEEKTRECEYCGKKFRFLSNLIVHRRTHTGEKPYKCSVCDHACTQSSKLKRHMKTHRRSNRGNGLAGGECGTTANGVDTSSTPDITSNDDDEDDSEIDDDEVEIEEEDDGDEDDADEDDGDEDDEEEEEEEEEDMELEDEDNDENDEGGDVPEDLTTKSTSSAEHDKKRGSNGSTRTSPENTPGDRVPQPLPPSSLVGELMSKFGLSNIQQYSEAYKQALKESSSLLPPQYRIRRKDNFRLSPSIIPDNNNGSAKSANPLRNLENGLGDKAAADIRFREELTKNLIAAGQNPLDLVGAHHGIFGPGSAFENPFDQASKRLKLDTDNPHHPLLSRERLYAANMWLPAIAAHHRGESFLSGLPGKPPSAGSGVGEPVSGGGSGGRSKPGPSSLSAALNLQGLQGGHAKKESRRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQNIKLEGSQYIKMDDGSKTESGGGYILPPSSLVDDESYSSSIVSKDNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184809;
90% Identity: iTF_01032403;
80% Identity: -