Basic Information

Insect: Pentalonia nigronervosa
Gene Symbol: -
Assembly: GCA_014851325.1
Location: scaffold:8437-12136[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00061 0.071 14.2 3.5 3 23 154 174 153 174 0.98

2 10 0.0002 0.023 15.7 4.0 1 23 180 202 180 202 0.96

3 10 2.9e-05 0.0034 18.3 4.9 1 23 208 230 208 230 0.99

4 10 7.1e-06 0.00082 20.3 3.5 1 23 236 258 236 258 0.97

5 10 1.4e-05 0.0016 19.3 1.4 1 23 264 286 264 286 0.97

6 10 0.00031 0.036 15.1 0.1 1 23 292 314 292 314 0.98

7 10 0.072 8.3 7.7 0.1 3 21 321 339 320 340 0.93

8 10 0.00024 0.028 15.5 0.0 3 23 362 382 361 382 0.97

9 10 0.00014 0.016 16.2 2.3 1 20 432 451 432 453 0.94

10 10 2.4e-05 0.0028 18.6 2.6 1 23 464 486 464 486 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00061	0.071	14.2	3.5	3	23	154	174	153	174	0.98
2	10	0.0002	0.023	15.7	4.0	1	23	180	202	180	202	0.96
3	10	2.9e-05	0.0034	18.3	4.9	1	23	208	230	208	230	0.99
4	10	7.1e-06	0.00082	20.3	3.5	1	23	236	258	236	258	0.97
5	10	1.4e-05	0.0016	19.3	1.4	1	23	264	286	264	286	0.97
6	10	0.00031	0.036	15.1	0.1	1	23	292	314	292	314	0.98
7	10	0.072	8.3	7.7	0.1	3	21	321	339	320	340	0.93
8	10	0.00024	0.028	15.5	0.0	3	23	362	382	361	382	0.97
9	10	0.00014	0.016	16.2	2.3	1	20	432	451	432	453	0.94
10	10	2.4e-05	0.0028	18.6	2.6	1	23	464	486	464	486	0.97

Sequence Information

Coding Sequence: ATGTTAAAAAGGTACAATGACAGTCTCCAGCCAATAAGATTGGTGACGGACCATCTAACTGAACGGCTGAACCTTGACAGTGCATTCGCGTTGCCGTTGGCCAATTCAGGTTCTGCGTACTTCGAACCGAAACCGACAAAGAAGGGCCGGCCGGTGACTGGACAACATATTCGGCTTGCGGCCAAAAAAAATAACCAGAATGATGTGACAACGATGAGCAACAATCTCATGTTTCGAAGTATGTTTTTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCTATACAATTGTCTACAACTGACGGAGAGTATTTCACTCGCAAAACTGGTAATCCTAATTTGAATACACACCATCAACAGCAACAGCAGCAAGCCGTTGCTGCACTTGTCAATCACGATTCTAGTTCTAGTGTTGAAATCAAACCTTTACAACCACCGAAAGCACGTCCTCACGGGTGTGAAGAGTGTGGCAAAACGTTTCTAATGAAACATCATTTGTCAACTCACATGCGAGGTCATACTGGTGAGCGACCTCATATTTGTCCTGAATGTGGAAAGACTTTTGCTCTCAAACATTGCCTAAGTACTCATTTGCTATTGCATAGCTCGGAACGACCATACAAGTGTTTAGAATGTAATAAAAGTTTTACCTTAAAACATCATTTGGTAAGTCATGAAAGAGTGCATACTCGAGATAGACCATTTGAGTGTCCTGAATGTCGTCGTCGATTTCCTCAGAAACGTCATCTGACTACTCATATAAAATTCCACTCTGGTGAACGACCATACTCTTGTTCTGTTTGTGGTGAGACATTCTCGCGTGAAGAACATCTAGTCATGCATTCAAGATTTCATGGAGGAACACAACCATTTGTGTGCCCAGACTGCGGAGCTGCATTCTTGCGTAAATTTGAATTGGTTAACCATGAACGACAGCATGGTCGTATACCTGAATCTTGCCCTGCTTGTGGTAAAGAATTCTTACAGAGACGCACATTATTGGTTCACGTAAGAAACTGTGGCCTTAATTCATCGACACCAGTACATAGATCTCCTTATACCGCAACTGCGAGCAAAGCATGCCGTGAATGCGGTGAAACATTTGCTAGTGATGAAGGATTAGCACTTCATATGCGATTACACATTGGTGACCATAGTTTCCTATCTGATATTTGTAGTCTAGCTGCTACATTGAAACAAAGTGTACAAGGTGTATCAAATGGTATTGCCAATGTACAAAATCATCACCAATCACAACATCAATCTGGTGTTGTAGCCAATAAAAAATCTCACTACTGTGGAGATTGTGGCCGTGGCTTCACCCAAAAACATGGCTTACAACAGCATCACGTAAAATACCCAAATGCCACATGTAAAGATAAGCCGTTCGCTTGTCAAAAATGTGGTAAAAGTTTCATGCAAAAAAATCATCTTGTACTACATGAACGGCAACATATGGATCCACCGCCATCCAGAAATCGTAATGCTACAACTTCAGCTGTTCAATCCATACAACATTTACAGACTGAACAAGTTGGCTTGCAACCAACTCCTCTTCATACAACTATCCTAGGACTACAGCCTATTAGGCATATTCAATCTGGTAGTCAACCTCAACTTTTAAGACATCCCAGTGAGGCCCATTCAGGGTCATAA
Protein Sequence: MLKRYNDSLQPIRLVTDHLTERLNLDSAFALPLANSGSAYFEPKPTKKGRPVTGQHIRLAAKKNNQNDVTTMSNNLMFRSMFFMNEEARHFLAPPIQLSTTDGEYFTRKTGNPNLNTHHQQQQQQAVAALVNHDSSSSVEIKPLQPPKARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLSTHLLLHSSERPYKCLECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQKRHLTTHIKFHSGERPYSCSVCGETFSREEHLVMHSRFHGGTQPFVCPDCGAAFLRKFELVNHERQHGRIPESCPACGKEFLQRRTLLVHVRNCGLNSSTPVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAATLKQSVQGVSNGIANVQNHHQSQHQSGVVANKKSHYCGDCGRGFTQKHGLQQHHVKYPNATCKDKPFACQKCGKSFMQKNHLVLHERQHMDPPPSRNRNATTSAVQSIQHLQTEQVGLQPTPLHTTILGLQPIRHIQSGSQPQLLRHPSEAHSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305888;
90% Identity: iTF_01305888;
80% Identity: -