Pmus024078.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829125.1:3507261-3522345[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.16 13.1 0.8 3 23 363 384 362 384 0.93 2 12 1.4 1.1e+02 4.2 0.2 2 21 424 443 423 444 0.93 3 12 3.7 2.7e+02 2.9 0.7 1 13 448 460 448 461 0.88 4 12 7 5.2e+02 2.1 3.6 1 23 708 729 708 729 0.85 5 12 0.14 10 7.5 1.4 1 23 740 762 740 762 0.96 6 12 0.00085 0.063 14.4 0.0 3 23 769 789 767 789 0.97 7 12 0.0092 0.68 11.1 1.8 3 23 876 896 876 896 0.95 8 12 0.00016 0.012 16.7 5.1 2 23 912 933 911 933 0.97 9 12 1.1e-06 7.9e-05 23.5 2.5 1 23 939 961 939 961 0.98 10 12 0.0003 0.022 15.8 0.6 1 23 966 988 966 988 0.98 11 12 0.0081 0.6 11.3 0.4 3 23 996 1017 994 1017 0.91 12 12 0.0002 0.015 16.3 0.9 3 23 1056 1077 1055 1077 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAATCCTCGACGAAGCGATCTAGAAAATCTAAGTTAGAACCAcgaaaatatgtagatattgaCGATTATGAAAACACCACGGACTTGCAGCAAAAACCAAGTACgtcaaaaagaaagaaaaagcgTGAGAAAAATGgcccaaaaaaaacaaaaagtcaaGAAACAGTTCAAGCAAGTGATGACTTCGAAGCCCTCATTGACTCTCAAAAGACCGGAGCAGACCAAAAGACCGAAGCAGAACAAAAGACCGACGCAGAACAAAAGACAGGATCAGCAGTTCCTCCATCACCCTTAAAATTCTCTGTTACTGTAGCAGTAGAAGAATTTGACGAGAGTGATTCAGAGTTAATGATAATAGAGCCCGAAGATAATACTATCGAGATCCTCTCTGACTCGGACACTGAAAAAGATAATAATGCACGTATGAAAAGTAAGAATGAAACTGCACATACAAAAGATATGGTTAACGATGAACTTGAGACATTAGTATTGGATAGAGAAGATATACTGAACGCAACGAACAAAATTCTAGAAGAATCTACTGATATATCAGACAAAATTCTGGGGATAGACGTAAAAAATTGCCTCGGACAGTTTCCTATCAATGACGAACAAGATAGTAAACTTACTAAAGTATTCATACAATGGGAAGCGTGGCAAAAGTTAATAAACCAAGTAAAATACAGAAGTTCTCCATTATTCTACAAATGTTATATATGTGAACTATCCTGGTGGTATCTCCACGATTTCCGAGAACATTTGAAATATCATGATGACGATTACAACCTTGATCTCGAAGAATATACCATATTTGAAGCTAATGTTATAGCATATTCAAAAGTTGAAGAAATTCtagatataaaacatttttacacTGACGGTGATTGCCCGAAATGTGGCAACGAGTTCGCTATACATAAGACAACCAACCGATCAAAGAATTCACTGTACAGCTGTAAAGTCAGATCGTGTTATAAGTTATTTTATACCTGCTTCGCATTAAGAAGCCACGAATACATGTATCATACTATATCTGAGTTAACCGGTATAGCGTTTCAAGTAGGAAGACAAGGAAAAAATTGTGAAGTGTGCGGTTTCGTTTTTCATTCACAAGAGTCGTACCAAACGCATATGGATTTAATGCATAGTGTACGTTCAGATGTAGTCGTTCCTGCCAAGTATCGGAAGTGTAATCGTTGTAAAGCTGTCTACGGTTGGGATCATCATTGTAAAAACAGTATTACTAAAGTTCACACACCAGTGCCGTGTAGATTTTGCTATAGGAGTTTCTTACAAGCGCAGGCATATCGTAATCACATGAACCAAATTGGTAGATATCAGTGTAAAGTATGTAACATTATGCTGACAAGGCAGTGTATAGAAGCTGAACATTTTCTCAAGCATTCTGACAAGTTTACTGTTGTGAAGAAATGTGGGGTTTGCGAAGACTTCAATGTGTTTACGGACGATGCTGCGGCTTTGAAGcacatttacaaacattacCAATGCACTGAGGAGACTTTCACGAAGTATTGCAGGAATATATTGATTCCAAAATCATGTTTAACTCAAAAAATGGACCTCCAGCAAAGCGTTTTTATTGAAGTAGAAGTTAACGAAATGATCCCAGAAATAGAAGCAAAAGAAAAAACCCCACCCGTTGAATTAGAAATCAAACAAGAAGCCGAGGAAACCGTTGAAAATCAGAGCGACGAAGAATTTGAAAGCCAACTTCAAATCAAAGAGGAAATTGATATAGAAGACAATTTCAACGCAGAATATTTAAAGAAAGAATATTCTAGAAAGCTTGAAGAAGACGCCGAGATGCATGCAAGAATATTCGGTGTGAAAATCGAAGCTAGTGACATAGAGGTTAAACAAGAATTGGTAGAAGAAGAATATGAGGACGATATAATAAAACTAGATTATAATTTTCTTGAAAACATGCAACAATCTATGAACAGCACTACAGCTTATGTGGAAGGTAATGAAGTTGAAATGCAAGGGTCAGATGATAACACACAAGAAGACGAAATAGACATGGATGATGAAACAGATGGAGATTCAGAATTTTATCTAGAAGAGAGGAAGAAGAATGGGAAACAACCTAAAATTTACAGATGCCATAAATGTGGTTTCGATGCTGTACACAAAGAGTATCGGGCTCATGTCAAATCTCATTGCAAAGAACGTTTGTACGAGCTAGAAAAATACCCATGTACAAAATGTTCAATGAATTTTGAtacttttgaaaagtttatcgACCATTTTAATGAACATAACCTCAACAATATGGCTTGTCCggagtgttataaaatatttgaatcgtATGAAGCGTTACAAGTGCATTTATCATCACATATACGCACCACTTATGCAGTTCTTCAATCGTCTCCGGCTCTAACAAATACACAGTACCATTATATGTGTAAAATATGTCAGGATACCGTTGCTAAAGATGAGTTTTTTGTGCATTGGGAGAAGCATCTGTCGTTCTTGGAAATTGAGAAGGCAATTGAGAAAAATGTAGAACGTTCCGAGCCTATCAATGCAGAAATGTTAGAACAGCTATTGGaacgCCTACAATCTCCGCACTCGTCATTTAAAATGAGAAGGGGATGTCCAATATGTTTGCGACATTTTGATCGAAAAAACGATTATAAGCGCCATCTTGTGGAGCATTTATTGAACCACGCGTATACACAACACTCTATATATGCAGGGCTGAAGTGTCAAATATGTGTCAAATGTTTTGAAAAACCGGACCACTACAAGAAACATATGAGGGATCATGGCTGTCTGAAAGATTATAGGTGCGACATATGTGACAAGAATTTCAGCGATTCTAGCAATTATACTAAACACAAAAAGCTACACAATGCAAACGCATTCACTTGTGACATATGTCGGAAGAAATTTCAGATCAAGATCTCGCTTGAGAAGCACATGGCGgtCCATAAAAACCAGAAACCTATTGAATGTGCACCATGCAACAAAACATTTATACTAGAATCATCATACAAGAAACATTACCGCATGTACCACGATAAAGACAAACGGAAATTCGCATGTATGCTCTGCAGAAATAAATTTCACTCTTTAAAAGAGAAATGGGATCATCTATGGTACGTTCACAAAGAACGGAAGCATAAAGCCGATTGTCCTAAGTGTGATTCCTCGTATAGGAGGTTCAGagatttaaaaaatcatatgcGAGAGGTGCATAATACTGAATTGAGATGTTTGCCTTCTGCTAAACAGACTAAAAAAAACACGAAGGATATAATCAAGAAAAAAATGGCCACCACTGTGCGACTACCCACGACGGCAGCGAAAAAAGAAACCTTAATTGTCTATGTTTag
- Protein Sequence
- MSESSTKRSRKSKLEPRKYVDIDDYENTTDLQQKPSTSKRKKKREKNGPKKTKSQETVQASDDFEALIDSQKTGADQKTEAEQKTDAEQKTGSAVPPSPLKFSVTVAVEEFDESDSELMIIEPEDNTIEILSDSDTEKDNNARMKSKNETAHTKDMVNDELETLVLDREDILNATNKILEESTDISDKILGIDVKNCLGQFPINDEQDSKLTKVFIQWEAWQKLINQVKYRSSPLFYKCYICELSWWYLHDFREHLKYHDDDYNLDLEEYTIFEANVIAYSKVEEILDIKHFYTDGDCPKCGNEFAIHKTTNRSKNSLYSCKVRSCYKLFYTCFALRSHEYMYHTISELTGIAFQVGRQGKNCEVCGFVFHSQESYQTHMDLMHSVRSDVVVPAKYRKCNRCKAVYGWDHHCKNSITKVHTPVPCRFCYRSFLQAQAYRNHMNQIGRYQCKVCNIMLTRQCIEAEHFLKHSDKFTVVKKCGVCEDFNVFTDDAAALKHIYKHYQCTEETFTKYCRNILIPKSCLTQKMDLQQSVFIEVEVNEMIPEIEAKEKTPPVELEIKQEAEETVENQSDEEFESQLQIKEEIDIEDNFNAEYLKKEYSRKLEEDAEMHARIFGVKIEASDIEVKQELVEEEYEDDIIKLDYNFLENMQQSMNSTTAYVEGNEVEMQGSDDNTQEDEIDMDDETDGDSEFYLEERKKNGKQPKIYRCHKCGFDAVHKEYRAHVKSHCKERLYELEKYPCTKCSMNFDTFEKFIDHFNEHNLNNMACPECYKIFESYEALQVHLSSHIRTTYAVLQSSPALTNTQYHYMCKICQDTVAKDEFFVHWEKHLSFLEIEKAIEKNVERSEPINAEMLEQLLERLQSPHSSFKMRRGCPICLRHFDRKNDYKRHLVEHLLNHAYTQHSIYAGLKCQICVKCFEKPDHYKKHMRDHGCLKDYRCDICDKNFSDSSNYTKHKKLHNANAFTCDICRKKFQIKISLEKHMAVHKNQKPIECAPCNKTFILESSYKKHYRMYHDKDKRKFACMLCRNKFHSLKEKWDHLWYVHKERKHKADCPKCDSSYRRFRDLKNHMREVHNTELRCLPSAKQTKKNTKDIIKKKMATTVRLPTTAAKKETLIVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -