Pmus023648.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829124.1:8912336-8918309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.5 1.9e+02 3.4 0.4 1 23 382 405 382 405 0.91 2 9 2.9 2.1e+02 3.3 0.6 2 20 430 448 429 452 0.89 3 9 0.037 2.8 9.2 4.3 1 23 471 493 471 493 0.97 4 9 0.00068 0.05 14.7 3.0 2 23 498 519 497 519 0.96 5 9 0.0005 0.037 15.1 0.2 1 23 524 547 524 547 0.96 6 9 3.7 2.7e+02 2.9 0.9 2 23 553 575 552 575 0.92 7 9 0.0035 0.26 12.5 4.7 1 23 581 604 581 604 0.97 8 9 1.4e-05 0.001 20.0 2.0 2 23 610 631 609 631 0.96 9 9 0.00026 0.019 16.0 3.1 1 23 637 659 637 659 0.98
Sequence Information
- Coding Sequence
- atgGATTCAACAGACCCTTCTTGCTCTGAAAGCTGGGTATCACAACCCGATGTATGCCGCTGTTGTGTTTCATCCCACGGCATTTGGGATATTACTTCTACATACATTACTGAAACTGGTGAAAAAGAGGTGTACGCCGACATGTTACAGGAATGCTATGGAATTACACTCTCCAGCATATTACAATGGGCCCCCAGGATGGTATGTGCGCTGTGCGTGGAGCACTTACGGGGAGCCACCAACTTCCGCAAGCAAGTTTTAGCGGCAGACCAACAATTCCTCATGTACTGTAATGCAAAACTACATAAAACTATTGACATCACAATGGACACAGATACAACGGACTCACAGATACGGTCAGAAGCCAATACAATACTGCCGCTGGTGGCTCTGAACTCTCAACCGGAGTCTGAATCTGAAACTCCCATGGCTGGACAGTCGAGAAAGACACAAGTGCCAGATAGTACCGGACATGGAATGGACGGAGAACTTGTGAATGAATTTCAAGTACCAAACGATAAAACTATTGATGTCATAAATACAGATACAATGGACTCACACACTCGAGTACAGGCTTGTGTACTGAAGAAAAAGAGAGCAAAACCATCACCGAAATCCAAGAAATCTCCGTCCTTGGTGGCTATAAACCCTCAACTGGAGTCCTCTCATACCAGTGCAGAACCTGTTGATAAATTTAAAGTCGAGCTACTATCGAGCTCCGCCGCAACACAGTTAGTTAAACTGGAAAAATACCCTGGACTCAGAGGTGACAGCTCCGGAAGACCCGGACGTGACGGAGGCTTGGTTGCCGGTAAGAAAAAGCGAGCTATAATGGTACAGCAAGGAAAGAAATCGAAACGAAAAGCTACGAAAGGTTTATCACCTCGTGATACACGCGGGGACTGTAAGAAGTCATCACATAATTCAGGAGATGACGAGCCCAATGTTCTAATGTCAACGTTATTGGAAAAGAAACGTGCGCCAGAGAATACTGATCTAGAAAATGGCGTTCTACCTAAAAgctTCATCTTCACGGGGCTACAGAACGAAAAGCAGGTATCAGAAAGGAAACGCATCATTCTCACGTGTAACATCGTACTTCAAGAAACCAACGCTTGCCCCTTCAGACACCACAAGAGCTGGTTCCAATGCTTCTTCTGCCAACAGGACTTCATGGAAATAAATCCGCTTAGGATCCACACCGTGACAATTCACTCAAATATATccgatgaattaaaaaaaataaaacgctACCCGCGGTCTTTGCAAATAGAAATTTCAAATCTCGAATGCCGCCATTGTGCTTTGAAATTGACAGATGTCAGTTCGATGCGCCGCCATTTTGTCGATGTgcataaaaaagttatatatgAAGAGTGTATTGCAGATTACAAAGTGAATAGAAGTCCATATGCTTGTCACTTGTGTGAGAAACAATTCCATGTGTTTAGAAGTTTAACAACACACTTAAATGAACATTACGCGAACTGTGTTTGCGATGTGTGCGGGAAATCGTTTTTAAATTCTAAAAGGTTAAAAGTTCACAAAAGAACACACGAAAACGGTCAATTTCCTTGTAACGAATGTGGAAAAGTACTTAAAACTAAGACTTCCAAAGTTAATCACATAGAAAGTGCACACTCCAAACGAAAAATCAAATGCCAGATATGTTTTGAACCTATGAAACATTATAACGATAGAATTAAGCATATGTCtgaagtacataatataacacaTACATTTAAGTGTCACATATGCAGTCGGgaatacaatataaaacattatctAGCTACCCACATTCGTCAAACGCAcggacataaaaataaatattgtttagaaTGCGGAATGGCGTTCGTTACTAAtcatagtttaaaaaaacatatgttAAAACATACTGGGTTGAAGCCTTACACGTGCAGTGTGTGTTGTAAGTCCTATGCAAGGAGTTATACGCTGAAAGAACATATGAGAGCGCATGATAATGAGATATTCTTAGCACCTGAGTAG
- Protein Sequence
- MDSTDPSCSESWVSQPDVCRCCVSSHGIWDITSTYITETGEKEVYADMLQECYGITLSSILQWAPRMVCALCVEHLRGATNFRKQVLAADQQFLMYCNAKLHKTIDITMDTDTTDSQIRSEANTILPLVALNSQPESESETPMAGQSRKTQVPDSTGHGMDGELVNEFQVPNDKTIDVINTDTMDSHTRVQACVLKKKRAKPSPKSKKSPSLVAINPQLESSHTSAEPVDKFKVELLSSSAATQLVKLEKYPGLRGDSSGRPGRDGGLVAGKKKRAIMVQQGKKSKRKATKGLSPRDTRGDCKKSSHNSGDDEPNVLMSTLLEKKRAPENTDLENGVLPKSFIFTGLQNEKQVSERKRIILTCNIVLQETNACPFRHHKSWFQCFFCQQDFMEINPLRIHTVTIHSNISDELKKIKRYPRSLQIEISNLECRHCALKLTDVSSMRRHFVDVHKKVIYEECIADYKVNRSPYACHLCEKQFHVFRSLTTHLNEHYANCVCDVCGKSFLNSKRLKVHKRTHENGQFPCNECGKVLKTKTSKVNHIESAHSKRKIKCQICFEPMKHYNDRIKHMSEVHNITHTFKCHICSREYNIKHYLATHIRQTHGHKNKYCLECGMAFVTNHSLKKHMLKHTGLKPYTCSVCCKSYARSYTLKEHMRAHDNEIFLAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -