Pmus024113.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- Bcl11b_1
- Assembly
- GCA_963691645.1
- Location
- OY829125.1:4081035-4086775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.48 36 5.7 4.2 1 23 257 280 257 280 0.96 2 11 1.2 93 4.4 0.1 1 22 288 309 288 311 0.88 3 11 0.26 19 6.6 2.1 1 23 315 338 315 338 0.97 4 11 0.022 1.7 9.9 3.1 1 23 342 365 342 365 0.97 5 11 0.024 1.8 9.8 0.9 3 23 370 391 368 391 0.93 6 11 0.0042 0.31 12.2 1.5 2 23 395 417 395 417 0.95 7 11 0.0033 0.25 12.5 0.8 2 21 432 451 431 456 0.93 8 11 1.5e-05 0.0011 19.9 0.2 2 23 465 487 464 487 0.95 9 11 0.0034 0.26 12.5 3.0 1 23 493 516 493 516 0.96 10 11 0.0018 0.13 13.4 0.8 2 23 526 547 525 547 0.97 11 11 3.6e-05 0.0026 18.7 0.9 1 23 553 576 553 576 0.98
Sequence Information
- Coding Sequence
- AtggatataaaaatgaaatgcgAGCAGATAAATATGCTATGCCACGGATGTTTGTCTGGAGACCGAACAGTTCACCACATTAGCGGAGATATCAGTGAAATGTTTTATGAACTTAGAAATTATacacacaataaaaataaaaatcgtCTTGAAATTACACTCTGTTGGGAGTGTGTGGCATTTCTGAAGAAATTGAAAATGTTTCGAGCAAAGATCAAAAAGGCGCAGCGCTTACTGACACAGTACATAaagtgttattataaaaatgACCCCATTCCAAATCTAAACAGCTTATCATCACTAAACAAATTACATATCAACACATTTGATTATGAATTTAATGAACAAGAGAAACCTTTATCTCAAGATCAAGATATGAAGTATGATGTACGAATTGAAAGTGAGAAGAAGGAATCAGTtgataaacatcaaaataaacaattaccaACAGAAGAACTACTCGCAGATATAAAAGAAGAATACAATGATAGTATAAAAGAAGAATACAACAGCAGTAATGATAATGATTCCGATTACTATGAACCTGAACTTAAATTTGAGGTTGCAGAGTCTGAAGATAAATCTTCCACAATGAAAAAATATCCTCGTAACCATAAAAAGTACCAAAAGTTTGCAATTGTGACAAAAAGAAAGGATATTTGTAAGAAGACTTATTTGAAGTTTGCCGAGTCCGTATCGTTAGATCAGACAGAGTATGAGAAAATATTGAAACGCGATAGGGGTCGTTATGGGTACCCGAGGATGCCATTTAAGTGTAATGAATGTAAAGTAGggtatttaaaacaatttgaCTTACAGCGGCATAAGAGTAGTTGTCACAGTAATgagtcgACATTCCCATACAAATGTGCAGATTGCGCCACGATGGTGACGTCACTGGAACAGCAAGAGCAGCATTGGACAGACGCGCACTCCACACTGTACAAGTGCACGATATGTACCGAGGTGCACCAGTCGgcctttgaaattaaaaaacatatcaaaatgaaacatcGCAGGAATTACACCTGCAATGAGTGTGGCTTCGACTGTGGGAGTTTCTTTGAGTTCCGGAAGCACTACCAGATGGCGCATGAGAGAGTTATTTGCGACTACTGCAACGGGATGTTTATGAAAAAAAGAAGTTTGATTTCTCACATACACCTCTATCACATCCCAGCATACTGCGGCATATGTAACCGCATGTATGCCAACAACAAAACCTTCAAGTCCCACAACCAGACGACGCACCCCGAGCAGAGCGCCGGCGCCGACACACGCAAGGAGCTGTCGTACTGCGTGGAGTGCGACAAGCAGTTCCCGAGCGAGTACAAATACAAGAAGCATCTGCAGCAGTCGGTCAGGCACACCAAACAGAAAATAGTCAGagTGCCGTGTCCCGAATGCGGAAAAATCTTCAGCAGAACCAGTTTCATGAACAACCACTACAGATTGGTCCACCTGAAGGTCACCAAGCACTATTGCGATCAATGTGATAAGTATTACACGACGGGCTATGGACTTCGGCAGCACATTACGCGATTTCATAAGAAGATCGCACTACCCAAGGACAAAATGTGTGACCTCTGCGGACGAGGGTTTGGAACCAACAATATTTTACGCAACCACCGCCGCACTCACACGGGCGAGCGGCCCTTCAAGTGTAAGTACTGCCCCGCGGCCTTCGCGCAGCAGACCGCCATGAAGACTCACCAGAAGTCGCAGCACAAGAACGTGGACTTGTCCAGTTAG
- Protein Sequence
- MDIKMKCEQINMLCHGCLSGDRTVHHISGDISEMFYELRNYTHNKNKNRLEITLCWECVAFLKKLKMFRAKIKKAQRLLTQYIKCYYKNDPIPNLNSLSSLNKLHINTFDYEFNEQEKPLSQDQDMKYDVRIESEKKESVDKHQNKQLPTEELLADIKEEYNDSIKEEYNSSNDNDSDYYEPELKFEVAESEDKSSTMKKYPRNHKKYQKFAIVTKRKDICKKTYLKFAESVSLDQTEYEKILKRDRGRYGYPRMPFKCNECKVGYLKQFDLQRHKSSCHSNESTFPYKCADCATMVTSLEQQEQHWTDAHSTLYKCTICTEVHQSAFEIKKHIKMKHRRNYTCNECGFDCGSFFEFRKHYQMAHERVICDYCNGMFMKKRSLISHIHLYHIPAYCGICNRMYANNKTFKSHNQTTHPEQSAGADTRKELSYCVECDKQFPSEYKYKKHLQQSVRHTKQKIVRVPCPECGKIFSRTSFMNNHYRLVHLKVTKHYCDQCDKYYTTGYGLRQHITRFHKKIALPKDKMCDLCGRGFGTNNILRNHRRTHTGERPFKCKYCPAAFAQQTAMKTHQKSQHKNVDLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638068;
- 90% Identity
- -
- 80% Identity
- -