Basic Information

Insect: Pelosia muscerda
Gene Symbol: -
Assembly: GCA_963691645.1
Location: OY829126.1:433701-435302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0047 0.35 12.1 1.7 2 23 170 192 169 192 0.91

2 10 5.6 4.1e+02 2.4 0.2 1 7 198 204 198 220 0.84

3 10 2.3 1.7e+02 3.6 0.9 2 23 227 248 226 248 0.94

4 10 0.00027 0.02 16.0 2.3 1 21 253 273 253 274 0.94

5 10 4.6e-06 0.00034 21.5 0.9 2 23 294 315 293 315 0.96

6 10 0.00091 0.067 14.3 2.5 1 23 322 344 322 344 0.97

7 10 0.00016 0.012 16.7 1.4 1 23 350 372 350 372 0.96

8 10 0.00059 0.044 14.9 2.8 1 23 378 400 378 400 0.97

9 10 0.00079 0.059 14.5 6.6 1 23 406 428 406 428 0.97

10 10 8.9e-05 0.0066 17.5 2.9 1 21 434 454 434 457 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0047	0.35	12.1	1.7	2	23	170	192	169	192	0.91
2	10	5.6	4.1e+02	2.4	0.2	1	7	198	204	198	220	0.84
3	10	2.3	1.7e+02	3.6	0.9	2	23	227	248	226	248	0.94
4	10	0.00027	0.02	16.0	2.3	1	21	253	273	253	274	0.94
5	10	4.6e-06	0.00034	21.5	0.9	2	23	294	315	293	315	0.96
6	10	0.00091	0.067	14.3	2.5	1	23	322	344	322	344	0.97
7	10	0.00016	0.012	16.7	1.4	1	23	350	372	350	372	0.96
8	10	0.00059	0.044	14.9	2.8	1	23	378	400	378	400	0.97
9	10	0.00079	0.059	14.5	6.6	1	23	406	428	406	428	0.97
10	10	8.9e-05	0.0066	17.5	2.9	1	21	434	454	434	457	0.96

Sequence Information

Coding Sequence: ATGAATGACACGGAAAATGCTTACTGTCGTCTTTGCGCTGTGTGTATGCCAAGCAACAAGCTCTTAGATATACAATCTAATGTAGACCACGGTGAAAGAATAATCAACAAATTGACTGTTCTCAACTGCCAATTGGATTTCAATGAGAGTAATATGCCCAAAACTGTATGTTTACTATGTATTAACACACTAACAAGTGCATTTGACTTTGTAACTGCTGTAGAAAGAGCTCAAGAGGtactaaaaaatatagtttcatCCCAATCTATCAAGATAGAAGTCGACTGTTTCGATAGTGAATCCACAGCGTACGATACATTAGAAGACAAATACAcccataatattagtgtaaaaatAGAGCCGATGAAGGAAGATACAAGTTCCAAACCTCCAAGAACGTTGAAAAAGGTTAGAACTCCGgtgaaaagtaaaaataaaaaagatataaccGATTTAGATAGTATACCACTTTCTCAGTTAGACCTAACCTGGAAAGATTACATTTGGACCTGTTCATATTGCAAATATCAGTTCACTAACGTTGCAGAGCTGAATCAGCATTCCATGGAGTGCCACAGTGCCTGTAGTGCATATCGTTGTACTGACTGCAACGTTAAGAAGTTACGGCTTGATCGTTTCGTAGGCCATGTCCGTGGCCACAGGAAATATCTCCAGTTGTCTTGTTACAAATGTTTTATAACATATCCTTCTATTAAAATGGCACGTAAACACAAATTGTCACACATAAGCACAGGTTTTAAATGTGCTGGCTGCAATACCTGTTTTCAAACTTCAGAGGAACTTAAAAAACATACAAGTACGTTCTACAGAGATTTACGAAAGCGTAGAATACCGATACAGACACGAAAAGACAATTTATCTTGTCATATATGTGAAAAGGCTTTCTCAACTAGAGTTTCTTTGAACCAGCACTTGTTGATACATACGGACAGAGAACGTAACCACACTTGTGAAGTTTGTGGCAAATGTTTCTTGTCAAAACAGACTCTAGCTGGACACATGATGTTACATGAGGATAAGAGACCATTCCGTTGTGAAATTTGCATGAAAGCTTTCAGAAAGAGAAGTCACTTACGTGAGCATGTTGGTGTGCACGATGGTGAAAAGCCTTTCTCTTGTGACCAATGTGGTAAATGCTTCCGTCTACAAAAACTGTTAGATCTCCATAGTAAAGTTCACTCGGACTCATTACCTCATAGCTGCACATTTTGTAGTAAACGATTCCGTTTTAGAAATGATTTAAAACAGCATTTACGTCAACATACTCGTGTGAAGCCGTATACTTGTAATATCTGTGCGAGGGACTTTACAAATTGGGGGAATTATAACAAACATATGAAATGTAGACATAACATGGATATGGCAAAGAGGAAGCTTACTCCCCACGGTGTATACCCAATAGATCCGGTTACTGGTAAAGTCGTTTATCCAGAAATGGATAAAATTTTAGAATGGAAAAGTAAAATAATGGAACCGTCGAAGATGGGTAGGCCTAAAGTTAATGATAAAGTAGACGATTCCAACGTTGATGTTGTGGTTCCTACGGAGACAGTAGAAACTGAAGAGAGTAATAATAAGTAA
Protein Sequence: MNDTENAYCRLCAVCMPSNKLLDIQSNVDHGERIINKLTVLNCQLDFNESNMPKTVCLLCINTLTSAFDFVTAVERAQEVLKNIVSSQSIKIEVDCFDSESTAYDTLEDKYTHNISVKIEPMKEDTSSKPPRTLKKVRTPVKSKNKKDITDLDSIPLSQLDLTWKDYIWTCSYCKYQFTNVAELNQHSMECHSACSAYRCTDCNVKKLRLDRFVGHVRGHRKYLQLSCYKCFITYPSIKMARKHKLSHISTGFKCAGCNTCFQTSEELKKHTSTFYRDLRKRRIPIQTRKDNLSCHICEKAFSTRVSLNQHLLIHTDRERNHTCEVCGKCFLSKQTLAGHMMLHEDKRPFRCEICMKAFRKRSHLREHVGVHDGEKPFSCDQCGKCFRLQKLLDLHSKVHSDSLPHSCTFCSKRFRFRNDLKQHLRQHTRVKPYTCNICARDFTNWGNYNKHMKCRHNMDMAKRKLTPHGVYPIDPVTGKVVYPEMDKILEWKSKIMEPSKMGRPKVNDKVDDSNVDVVVPTETVETEESNNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -