Pmus011737.2
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829109.1:12119234-12127869[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.33 25 6.2 1.2 2 20 540 558 539 562 0.82 2 10 0.022 1.6 10.0 1.1 2 23 604 626 603 626 0.89 3 10 0.76 56 5.1 0.2 1 23 671 694 671 694 0.89 4 10 0.0058 0.43 11.8 0.3 1 23 735 758 735 758 0.88 5 10 4.6e-05 0.0034 18.4 2.2 2 23 776 797 776 797 0.97 6 10 0.013 0.97 10.6 7.1 1 23 807 829 807 829 0.97 7 10 0.00025 0.019 16.0 0.2 1 23 841 863 841 863 0.99 8 10 5e-06 0.00037 21.4 1.6 1 23 869 891 869 891 0.98 9 10 0.0012 0.088 13.9 1.3 1 23 897 919 897 919 0.98 10 10 6.1e-05 0.0045 18.0 0.3 1 21 925 945 925 946 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGATTCTGCAGGGGTTGCCTAGTAAGATATGAAGATCCTAGTGAAATGCTTCAATATAGTGAGAAACATAGAAGACTCTTTGTTTATTCAACTGGTATACAGGTGAAGAGAAATGATACAATTACATTCCAAATTTGTAAAGATTGTTTCCTAAGCATGAAGGCTTCGTGCAAGTTCAAAAAGTTATGTAGAGGTTCtgataaaaagtttaaaagctATTTGGCTCTGAAAGATGTGGAAAATGGTGTGGATTTCGGCACATTTCTCAAAAACAGTGATGATACTATGGCATTTCGTCTACCATTGAGTGGGAGCAGTACACCAGCCAACCAGAACAAATATAGAGATGATGATAATGAATCAACATGCACAAGTATCAGAAACTTCATGACAGACATCTTGCAAGGTGAAGAGGTGCTGGATACGGAAGCCCGCATCATTCATGAAGTAATACAAGAAGAGGCTGATGTATTGGATGACTCATTGGACTCACATTGGTTAGAAGATGATGCATCTATTGACACGGACTTCAGATTAGATTTTAGCATTAGCCCATTTGGCACCCCACATTCTGTAAATAATGATCATTGTTACACACCAAAGAGACTTGGTGATCCGAAAGaggaaaatatcaaaaaatatttcacctcAATTAGTCCCGCCAAACATCACAAACATGTAAACGACTTTACAGATATGATAAGAAATAATCAAAGTGAAAAAGAATTATGTATACATGGTACAGAAGAAATTAACGATGACGTTCCTGACAATAATTTTGATATGCCGATGATTGAAACTGAGAATTtagatttacaaaatataaacaatgaaaAAACTCTCAATAATTTAGATTTTCCAATTATTGATAATCAAAAATCAATAAAGAATCTAAATCTACCAATCAGTGAAGAAGAAAAATCTTTGAACAATTTAGATTTATCAAGCTTACCAAGCCTTGATggtaatgaaaaatatatgaacAGCTTAGATTTAAGCTTTGATAGTGAAAAATCATTAAACAATTTAGATTTACCGAGTTTACCAAGTGTTGATGATGAGAAATCAACAAATAACTTGGATTTACCAATAGTAGACAATGATAGCGGGCATTACAATGAAAAGATTCATACACCAAACTTTTATGTGCCGACAGATGGCACATCTTATATCACAGCAAGCAAAGAAATCGAGAAAATAGTAGATGCTAAGAAGTTAGATAAGAATAAACCATGTTCTATAGATAAGAACTTGGAAAAAGCATTAGAAAATGAGGACAATAAAGAATTCTCACTGGATGATCTGCTTGTTTCTCCAAGAGtttatCATGTAGCATCAGGAGCTTCTACACCTACAATAGCAAACATTCTATTTGGCGAAAAAGTAAATCTGAATAAATCAGGCACTAACAAAAGCCCAGATTATATAGAAGAAAAGTACAAGATTGAATTTCTTGAGGAGTTCCTCCAAGATGATACCCTAAAATTACATACGGTTGATAAAAAGGAAATAGTTGATATTAAAGAAGTCCCCACGGATGTGGATGAAGTGGATAGTGAAACAAAAGAAGCAACGGAAATCGACAAATTACAGATTGATTTGGAATCATGCTATTGTAAAATAtgtgatataaaatttaaaagcacTGAAGCAATACACTTGCATGCTATAGACGCAcacaaaatcaaaattagaGAACCAAAGCGTGTTAGAGATGAAGTGGACACTGAAACAGAACAAACAATCAAAAAGATTAAATTGTCAACTCAATTTGATGAAGGATATTTTGATTTAGAAAAATGCATATGTAACATTTGTGACAAACAGTTTGAACACTCCAAAGCAGTATATGCGCATGCTATAAACATACACATGGTTAAAATTACAAAACCAAAGATTTTTAAAGTTAGTGAAGCTGTGGTTGAAATGGATGAAACACTACAAACATATGATGAGTTAAAATTGTCAACTGATTCAGATGAAAAGCAATTTGATTTAGAAAGTTTCTTGTGTAAAATGTGTGGTGTACAGTTTGATAGCACCAAAGCAATAATTTTGCATGCTTTGaagaaacataaaattaaaataaaaaaaccgaaatttaaaaaagttcaaGTAGACATTGGAGTCAAACACACAGTTGAAAAGCTTAAATTATCATCTGAATTTGATGAAAAGCAGTTTGATTTAGAAACGTTCCGTTGCAATTTATGTGATAAAAAGTTTGACAGCTCCAAAGCAATATCTATACATGCTGTGAAGGCacacaatattaaaattataaaatctaagaATTTAGCAAACAAATATGAACCGAGAGTATGTAGTATTTGTGGAAAAGAATTCAAAACTCGACAGGCGTTGCAtcgacattttaaaatacacaacAAGaGTACACCAGAGCAAGGAGTGTTTAAGTGCCATCACTGTCATTTAGAATTTACAATGAAATCTAAAATAGAAAAGCATATTGTTAGCCACGGTGTAATGCGGGCCCAGAAGAAACCTGGAAAGtACGTTTGTGCAGATTGTGGGGCAACTAGTACAACAATAGGTAACTTTAGATTACACCAAAGAAGACACACGAATAACTATCTACATAAGTGCGTGGAATGCGGGAAGGGATTCTACCGCCTCTCAGATTACACTGTCCATATGAGGTTGCACACTGGTGAGAAACCTTTCCAATGTGCATTTTGTGAGAGTAAGTATTCACGAAAGGATGCTCTAACAAAACACGTGAAGCTtcatataggtGATAGACCATATAAATGCGAATACTGCGATTCAGCATTTGCAGCCAGAAGTCAACTTAATAAGCATATGAAATCCGCCAAATTATGTAAGAGAAGACGTGGTATTAATGTAGAGTCGATAGTTAAAATGGATGATGACGAGATCAAAACTGAGACTATAATTGATGCGAACGATATCCAAGAAGTCCTGCAGGAATTAGACGAAGAGGAAAATGTTGAAGATAATGTTCAAATAACCAGCCAGTTAccgtatatagacactgaaatgAGCAATTAA
- Protein Sequence
- MEGFCRGCLVRYEDPSEMLQYSEKHRRLFVYSTGIQVKRNDTITFQICKDCFLSMKASCKFKKLCRGSDKKFKSYLALKDVENGVDFGTFLKNSDDTMAFRLPLSGSSTPANQNKYRDDDNESTCTSIRNFMTDILQGEEVLDTEARIIHEVIQEEADVLDDSLDSHWLEDDASIDTDFRLDFSISPFGTPHSVNNDHCYTPKRLGDPKEENIKKYFTSISPAKHHKHVNDFTDMIRNNQSEKELCIHGTEEINDDVPDNNFDMPMIETENLDLQNINNEKTLNNLDFPIIDNQKSIKNLNLPISEEEKSLNNLDLSSLPSLDGNEKYMNSLDLSFDSEKSLNNLDLPSLPSVDDEKSTNNLDLPIVDNDSGHYNEKIHTPNFYVPTDGTSYITASKEIEKIVDAKKLDKNKPCSIDKNLEKALENEDNKEFSLDDLLVSPRVYHVASGASTPTIANILFGEKVNLNKSGTNKSPDYIEEKYKIEFLEEFLQDDTLKLHTVDKKEIVDIKEVPTDVDEVDSETKEATEIDKLQIDLESCYCKICDIKFKSTEAIHLHAIDAHKIKIREPKRVRDEVDTETEQTIKKIKLSTQFDEGYFDLEKCICNICDKQFEHSKAVYAHAINIHMVKITKPKIFKVSEAVVEMDETLQTYDELKLSTDSDEKQFDLESFLCKMCGVQFDSTKAIILHALKKHKIKIKKPKFKKVQVDIGVKHTVEKLKLSSEFDEKQFDLETFRCNLCDKKFDSSKAISIHAVKAHNIKIIKSKNLANKYEPRVCSICGKEFKTRQALHRHFKIHNKSTPEQGVFKCHHCHLEFTMKSKIEKHIVSHGVMRAQKKPGKYVCADCGATSTTIGNFRLHQRRHTNNYLHKCVECGKGFYRLSDYTVHMRLHTGEKPFQCAFCESKYSRKDALTKHVKLHIGDRPYKCEYCDSAFAARSQLNKHMKSAKLCKRRRGINVESIVKMDDDEIKTETIIDANDIQEVLQELDEEENVEDNVQITSQLPYIDTEMSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -