Basic Information

Insect: Pelosia muscerda
Gene Symbol: -
Assembly: GCA_963691645.1
Location: OY829125.1:8326011-8339510[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00046 0.034 15.2 2.0 1 23 241 263 241 263 0.99

2 10 0.013 0.98 10.6 2.1 1 23 324 347 324 347 0.93

3 10 0.00034 0.025 15.6 0.7 1 23 351 374 351 374 0.97

4 10 0.023 1.7 9.9 0.9 2 20 385 403 384 405 0.92

5 10 0.00015 0.011 16.8 1.2 3 23 418 438 416 438 0.97

6 10 0.00056 0.042 14.9 1.7 2 23 445 467 444 467 0.96

7 10 0.00023 0.017 16.2 0.9 2 23 486 507 485 507 0.97

8 10 4.2e-06 0.00031 21.6 0.9 1 23 513 535 513 535 0.99

9 10 1.8e-05 0.0014 19.6 3.9 1 23 541 563 541 563 0.94

10 10 1.5e-06 0.00011 23.1 2.7 1 23 569 592 569 592 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00046	0.034	15.2	2.0	1	23	241	263	241	263	0.99
2	10	0.013	0.98	10.6	2.1	1	23	324	347	324	347	0.93
3	10	0.00034	0.025	15.6	0.7	1	23	351	374	351	374	0.97
4	10	0.023	1.7	9.9	0.9	2	20	385	403	384	405	0.92
5	10	0.00015	0.011	16.8	1.2	3	23	418	438	416	438	0.97
6	10	0.00056	0.042	14.9	1.7	2	23	445	467	444	467	0.96
7	10	0.00023	0.017	16.2	0.9	2	23	486	507	485	507	0.97
8	10	4.2e-06	0.00031	21.6	0.9	1	23	513	535	513	535	0.99
9	10	1.8e-05	0.0014	19.6	3.9	1	23	541	563	541	563	0.94
10	10	1.5e-06	0.00011	23.1	2.7	1	23	569	592	569	592	0.98

Sequence Information

Coding Sequence: ATGGAAAATTTACTAGCTTGCAGAGTATGTCTCAATACAGACGTGAAATTGTACAATATGTACAATAACACTCTATTAAAGGCATACGAAAGTCTAACTGGAAATAATATGCCGTTACCAGACATCTTTCCCCGCTATCTCTGCAGTTACTGCCAACACCTTCTAGTGAAGAGTAACAGGTTCAGAGACAGGTGTATTCAGGCACAGGAGCTTCTGAAATGTGCCAATATGGAATTGCCAGAGtTAACACTGCAACATattcaaactctgtcgcaaaCTCATGCTCACTCTCTCTCTATATCCCCTATCGAAATATCCATAACATTACATCCTGTCCCCGAAACACTAATAAAAGAAGAATGTGACATTCTTCTAAAAGAAGAAATAGCAGAAGAAAGTGATGAGGAACCTCTAgcgaaaaaagtgaaaaaaagaaaaaagaatgaaTTAGAATGTTCCGAATTTGAATTCCAAGAAGATATTCTCGAacctataacaaaaaatatagagTATTCCGAATTTGAAACTGTCGACTTTGAAAAAGAGAAGCGCGGTTCTTTTTCCGATTTCGAATTTGAGACTGCGCCTTTTGGGACGACTGTTGCGGAGCCTGACGATTATATGGATAAAGAAGATAtagaagtaatatttttaagtaaagaAGAGCAAATAGAAGAAATATTGTCTAGAAAAAGTTCGTTGAATTATCAAAATTCCTTTTATAAGTGCGAGCTATGTTTTAAAGGATTTATGACGGATTCGACATATAAAAATCATATGATAAGGCATGATCCGAGTACAGGTGATCACTCGTGTGATATCTGTCACACAAGATGGCCGGACACGCGCTCTGCCAAAGCGCACAGCACCACAGCCCACGAAaggaaatatatttgtaaattatgTTCACATACCTCTAAATCCTGCCATAGGGCTAAGGAACATCTCAAATGGCACAAAGGGCACACATTCAGCTGTAAGATCTGTGGGGCCACCTTCTCAAAGTCCACGAGTCATCTGACTCACGTCCGTCTACAGCATCCCTCCCAGTACTGCTGTGATGTTTGCGGGGAGAGCTTCATCGGGCAGAACGGACTCAATATGCATAAGAAAAAAGCTCATAGAGGTTGCCAGgAATCGAAGCTGGAACTCTCGTGTAACCAATGCCTCATCCACTTCAAGACTACAGAAGCCTTGAAAAGGCATACCAGTTCTTCGATTGATGGGGTCTGTGATGCTACTCTGAGtgcGTGTGCCCACTGCGGAGACACCTTCTCCACTCAAGAACTGCTGAAGGATCACCAGAAATCGCACCAAAAGGACGACACCGTCAAATGTGATGAGTGTAACCGAACATTCGCCCACGAGCGTTCGTTCAGCGTGCACTACCAGCGTGTTCATCTGGGAATCAAACTCGCGTACAAGCGGAGTCAAGCCGGCCACCGCGCCCCCGTCGTGTGCGAGATGTGCGGGAAAAAGTGTATTTCCACGGCCACACTGGTGTACCACCAGAGGAcccacaccggcgagaagccctTCCAGTGTCCGCAGTGCCCCAAGAAGTTCAGCGTGTACCAGCGGCTGCAGATTCATATCCGGACCCACACGGGAGAGAGGCCCTTCAAGTGTACCCATTGCCCCAAGGCCTTCAAACATAAAGCGGCTCTGAACAGACACGACAGGGTACATACAGGGGCGAAGCCCTACCAGTGTTCCCACTGCCCCAAATCCTTCTCACAATCCAATTCTATGAAGCTCCACGTGAGGACTGTTCATTTAAAACTGCCAGCTCCTTACCGCAACCGGCGTAATAATAAACTCGATATACAAACttga
Protein Sequence: MENLLACRVCLNTDVKLYNMYNNTLLKAYESLTGNNMPLPDIFPRYLCSYCQHLLVKSNRFRDRCIQAQELLKCANMELPELTLQHIQTLSQTHAHSLSISPIEISITLHPVPETLIKEECDILLKEEIAEESDEEPLAKKVKKRKKNELECSEFEFQEDILEPITKNIEYSEFETVDFEKEKRGSFSDFEFETAPFGTTVAEPDDYMDKEDIEVIFLSKEEQIEEILSRKSSLNYQNSFYKCELCFKGFMTDSTYKNHMIRHDPSTGDHSCDICHTRWPDTRSAKAHSTTAHERKYICKLCSHTSKSCHRAKEHLKWHKGHTFSCKICGATFSKSTSHLTHVRLQHPSQYCCDVCGESFIGQNGLNMHKKKAHRGCQESKLELSCNQCLIHFKTTEALKRHTSSSIDGVCDATLSACAHCGDTFSTQELLKDHQKSHQKDDTVKCDECNRTFAHERSFSVHYQRVHLGIKLAYKRSQAGHRAPVVCEMCGKKCISTATLVYHQRTHTGEKPFQCPQCPKKFSVYQRLQIHIRTHTGERPFKCTHCPKAFKHKAALNRHDRVHTGAKPYQCSHCPKSFSQSNSMKLHVRTVHLKLPAPYRNRRNNKLDIQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00638031;
90% Identity: -
80% Identity: -