Pmus024883.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829126.1:4782187-4813064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.8 5e+02 2.1 0.7 2 19 489 506 488 510 0.85 2 18 0.011 0.84 10.8 0.2 1 23 520 543 520 543 0.95 3 18 0.04 2.9 9.1 2.0 1 21 665 685 665 686 0.95 4 18 0.045 3.4 8.9 3.8 2 23 748 769 747 769 0.95 5 18 7.7 5.7e+02 1.9 1.5 1 23 781 805 781 805 0.86 6 18 0.00017 0.012 16.6 0.3 2 23 812 835 811 835 0.97 7 18 0.089 6.6 8.0 0.2 1 23 841 863 841 863 0.93 8 18 0.0043 0.32 12.2 2.9 1 23 869 891 869 891 0.98 9 18 0.093 6.9 8.0 0.2 2 20 902 920 902 922 0.91 10 18 0.073 5.4 8.3 0.2 1 23 1001 1023 1001 1023 0.96 11 18 2.6 1.9e+02 3.4 7.2 1 23 1030 1052 1030 1052 0.95 12 18 0.0018 0.13 13.4 1.8 1 23 1094 1117 1094 1117 0.95 13 18 0.00023 0.017 16.2 0.8 1 23 1124 1147 1124 1147 0.98 14 18 0.017 1.3 10.3 0.2 2 23 1169 1191 1168 1191 0.96 15 18 0.0074 0.55 11.4 1.5 3 23 1218 1239 1217 1239 0.95 16 18 0.00019 0.014 16.4 1.3 1 23 1267 1289 1267 1289 0.97 17 18 0.00015 0.012 16.7 0.1 1 23 1295 1317 1295 1317 0.97 18 18 0.00049 0.036 15.1 0.7 3 23 1325 1346 1323 1346 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAGACCCAGCCTCCAGTGATCATATGCATGGAAAACGCAACCGGGGAGGATGTGGCGTTGAAGATTGAGCCAGAGGACAACTTCCAGACATTCCTTGATAAAGCTAAATCGTTATTAGGCTTCGAAGTAGACGTAAACTCTATAACCAAGAACCAACCAGTTTCTCTAAACGAAAACGTATACCAATTTCTAATGAACGCAGAACAGAGCATACAGCCAGAAGGCTTATCCCAAACGTTGGACCCAATGTTGGGTACAAACGAGGGCGCCGACGCCAATGACTTGGTGTACATATTGGACGATGGGACTCAAATAAGGGCATCACAAATACATTTCGATAATGATGACCCTTTAATTGATTTAACAGCTGAAAAGATACCTTTCGTAAAATACGCTGACGTCACAGATGATATTGATATCGAAAATTTCACCATAGAGGAAACTAAAAAGATTAATATAGTTGAAAGTCCTGTATCAAGATGGTCGAGCAAAAATTCTAGCCCAAAGTGCAGTTTCGTAAATTCTTTGCCGTTCAAACTTGTATGTAATAATACTTCTGGATTCGAAGCGCAATTCACTAAATATTTAGAAGCAAATACAGCCAAAACATACGCCACTTTGAACCCTGTGACTATAAGAAATAAGTCTCCAAAAAGCTTGataaaagataactttaaaaaCTATGATAGCTATCAAAGAAGCGATAGTCTATCGTATACTAGGGAAGACATTTTGAATATGTTTAAAGATTCTCCTATGACGTCACTGCCTTATGATCAGGGATATAGCGAAAGAAGGCATGTTAGGAAAACGGATCCTTCTAGACTAGTGCACAAGAATTGGAGTAAACCAATGACTTACGTAGATATAGATGGTGTTCTAATCGGTGAAAGCGAGAGTCAGATTTGTTTCATATGTGGGAAACATGTAGATAACAATGTAGATAAGCTGTATCTCTTCGACAACGAAGACCAGAGGGTCCACAGATGCTCACCTCAAAAGAAAATGTCGACCCAACTCAAGATTATATGCGAATGTTGTTTGAACGAAAATTTCAGACCGTGTAGAATGAAAAGTGCTAACCAATTTTTGAATCCAGACGAATTTCTGGTTATAAGAAACAATCAGCAGTATATATTTCAGAAGATAAAGAATTTTAGTTTCACTCGTTTTGGAAAGAAGGATACTAAGGAGACAAAGCAGGATAAAGAAGAATTTGTTAAAGTTGAAATTGGTTCTGATGGAGAGATTATTACGAAACCTATCGACAATGATCTTCGGGATGATGATGTGATTATAGTGAAAGATGATAAAAAAGAAAGTTGTTCCAGTGATGTGGAAATAATTGAGCCGGAACCAGAGATAGATAATTTTATAGACAATTTGGAAGAAGCAGATGAAGAAGTGAAAGAATTCTTAGGAAAATATTGTTGTGATACAAATGAAGCGACTGAACTTAAGTGCAGgttttgtgaaaaaatatttccgAATGTCAATGAAGTAATGGAGCATTGTGAAGCTCATAAACATGATTTGGAAGATGGGCAAGTCTTTCCATGCCCATTGTGTAATTATGGCTATCCTCATTTAAAATGGCTGAAGGGTCATCTGAAAGCAGCTCATGACAGAAACACAAGCACTGATCCGGCGAATTTAAAAGATGAAGTGAAAGACGAATCGGATCGAAAGTCTTCCAAAGTGAATTCGCCTATAGCGAAAAGAACGCGCAGTTCGAATAGGAAAAGTGATGAAGATAGGAAAGAAAGTGAGGCTTCAGACGAAATAAAAACAGAATCGAACGTCGCTCTGAACCAGCCAGAGCCACCCATTATAAAAATGGAGGTTAAACAAGAAGCTGTGGACAGCAGTGAGGATGAGATCTGGATAGTGCAGACAGCAGACATGGAGAGCAGCCAAGACTTGGAGAAACTCTTGGTTGTTAGTAAGGGTACTGATGAGATACAGCAATCTAAATCAGAGAAGAGTTTCAAATGCTTCAATTGCAGTCAAATATTCGCAACAGCTGAGAGCTTATCATCACATCGGTGTAAACGCAGAGGCAGGAAACGGAAAGTCAAGGATGAAAACCTTATATGTATACCCACGGAAGAAGATTTTTTGAAGAGGGCCCAAGGCCGTCCCAGACTTAATAATACAACAGGAGACAATGATTTACTTGTTATTCGTTCTCGCAAGCGCCGCAACAAGCAAGTGACGTGGAACCCCCAGATTGTCACCTGCCACAACTGTAACGAGTCCTTTACGTCCAAAGTGCGGCTCAAATTTCACATGCAGTTCCATGAAAGTACAAACACGATGTTATCAGATGGAAGGTACTTGTGCACGGAATGCACTGGAACCAACTTCTCCACGGAGACGGAGCTTTTCGACCACGTGCACTTCCAGCATGATAAGCAGAAGAGATGGCAGTGTCCCGTGGAGGGATGCGGGAAGACTTTCTTCTTGAGGGCAACACTAACGAAACATAGTCgtacacacacagacacgcgGAGATATGTATGTGTGACGTGCGGTAAACGGTTCCTGGATAAACAGACATTGGATGAGCATGGAGTCACCCATCTCCAGATCAAGCCGTTCCAGTGCCACATCTGCCTGAAGCAGCTGACCCGTCGCTCTCGCCTGCGAATGCACGTTCGCGCGCACGAAGAAGAGCTCGCGCCGCGTCTCGTGCGCGTGTGCGCCGTGTGCAAGCGCGCCTTCCGCGACGCAGACCACGCGCAGGAGCATACAACAAAATCGACGGAATGTATAGAAGCCTACGCGAACGAGCTGAAGGAAGAAACTGAGGAGATGATGGTACAGCTGTCTCCTACCAGCGGGCTCGTGCGACACACCGTGCAGATTATCGAGTCCCCAAAACTATCAAAGCCTATCAAACGCCAGGTAACCAACGATGTAGGCGAGCCATTGCTGGCTCAGCTGGCAGACGAAGCCAGGGCATTGATACGAGTGGTAGAAATCGAAAAGGCTTTTAGATGCGAGTATTGTGAAGATGTCTTCTACTTAGAGTCTGGTCTGAACAACCATCGTGTAATACACAAGGGGGTGAAGAATCCCTTCACTTGCCATATATGTAAAGTCAGCTTCGCTACGTACTCCAGatGTACCACTCATAAGACGACACACGGCTTTTACAAACGTTCGCTGGCTGACGCCAAGAAGCAAGCTGATGGGAATACCCAAAAGGATACAGGACCGACATCCGCCACCGGTATACTTGGGTATGGGGACTTCCCTGTCGTCAAACATTTCTTGTGCGAGGATTGCGGTCGTTCGTACCTACACTGGACATACCTACAAGTACACCGTCGAATGAAACACGCCAACGAAAACTTTTTGTATAAATGCAACCAGTGTGAAATGACCTTCCCTAATAGTTGGAGTTTGGCATATCACCGTAAGAAAGTGCACGGTAAAACAGGGCCTGATGACCCTGGGACAAGTAATAAACCTGCCAGGGAAGATTACAGgaTACCATGTCGAGATTGCGAAGAAGTCCTCCCGAACAAGACAGCTTTGTATAAACACAGGAAGAAAGAACACAGCGATAGTAATATGTCTGCCACGCGAACGAATAACGCTCAAGGAACATTCAGCGGTGAGGGGCGGGTATCGAACGCGTGCGCGCACTGTCCAGCCACGTTCACTCACGCGCCGGACCTACACAAGCATGTCAAagAGGTACACAAGGTGGAGGCGGAAGCGTCGTGCGGTTCCTGCAGCAAGTCGTTCGGCGCGACCGCGCATTCCGCGTGCGCTCGCCGACCGCACGTGTGCCCCGTGTGCGGACACGCCTTCCGCACGCTGTCCATGCGGAACGAGCATCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTGTGCGGAGTCGCCTTCCGCAGATCGACTGCGATGCGCAACCACCGCCTGATCCACAGCGGGGTGCGCGCGTGGGCCTGCGGGCGATGTCCCAAGCGGTTCAGGATTCGATCCGATCTGCGCACGCACTTACGACTTAAGCATCCCGCGACTTTACTCGTGTTTGAGATGGAAGGCCTGAACCCGTCTCCAGATGAGGTAATGAAACATCTAGCGATGCACAATATTTCACACGACAAGGTCATCGAAATCACCAAGATATCTTTCGCGAAGGGCACGTCTAGTGTGGTGCCCAACAGTGCCCGTGCCCTAGGGACACTGGCTGACGTGCCGCGGTCTCACGTCGTGTGCAGCAAGCCGCCACCGCCGCTCCACTTGGATGAATTCCAGCCGGCACGCCGGGGTAGAGGTATAGCGAAGAATCCACGCCGCCCCAAGATATTGCAACGTAGCATGTGTTCGCAGGACTCCTCTGCTTACCCACTAGCCGTCAACGTTGGAGGGGAGGAAATACCGGAGCTGAACCTTCAACTATTACTGCGGGATGGGGTTCTTGTCAACGGCAATCAGATGGTCCAACTGCAACTGGATGACCCCATGTTATTGGAGTAG
- Protein Sequence
- MSETQPPVIICMENATGEDVALKIEPEDNFQTFLDKAKSLLGFEVDVNSITKNQPVSLNENVYQFLMNAEQSIQPEGLSQTLDPMLGTNEGADANDLVYILDDGTQIRASQIHFDNDDPLIDLTAEKIPFVKYADVTDDIDIENFTIEETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTAKTYATLNPVTIRNKSPKSLIKDNFKNYDSYQRSDSLSYTREDILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKNWSKPMTYVDIDGVLIGESESQICFICGKHVDNNVDKLYLFDNEDQRVHRCSPQKKMSTQLKIICECCLNENFRPCRMKSANQFLNPDEFLVIRNNQQYIFQKIKNFSFTRFGKKDTKETKQDKEEFVKVEIGSDGEIITKPIDNDLRDDDVIIVKDDKKESCSSDVEIIEPEPEIDNFIDNLEEADEEVKEFLGKYCCDTNEATELKCRFCEKIFPNVNEVMEHCEAHKHDLEDGQVFPCPLCNYGYPHLKWLKGHLKAAHDRNTSTDPANLKDEVKDESDRKSSKVNSPIAKRTRSSNRKSDEDRKESEASDEIKTESNVALNQPEPPIIKMEVKQEAVDSSEDEIWIVQTADMESSQDLEKLLVVSKGTDEIQQSKSEKSFKCFNCSQIFATAESLSSHRCKRRGRKRKVKDENLICIPTEEDFLKRAQGRPRLNNTTGDNDLLVIRSRKRRNKQVTWNPQIVTCHNCNESFTSKVRLKFHMQFHESTNTMLSDGRYLCTECTGTNFSTETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCKRAFRDADHAQEHTTKSTECIEAYANELKEETEEMMVQLSPTSGLVRHTVQIIESPKLSKPIKRQVTNDVGEPLLAQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNNHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGNTQKDTGPTSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCEMTFPNSWSLAYHRKKVHGKTGPDDPGTSNKPAREDYRIPCRDCEEVLPNKTALYKHRKKEHSDSNMSATRTNNAQGTFSGEGRVSNACAHCPATFTHAPDLHKHVKEVHKVEAEASCGSCSKSFGATAHSACARRPHVCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHSGVRAWACGRCPKRFRIRSDLRTHLRLKHPATLLVFEMEGLNPSPDEVMKHLAMHNISHDKVIEITKISFAKGTSSVVPNSARALGTLADVPRSHVVCSKPPPPLHLDEFQPARRGRGIAKNPRRPKILQRSMCSQDSSAYPLAVNVGGEEIPELNLQLLLRDGVLVNGNQMVQLQLDDPMLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502366;
- 90% Identity
- -
- 80% Identity
- -