Pmus002234.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829099.1:11121922-11130358[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4 1e+02 4.3 3.3 2 19 207 224 206 229 0.89 2 12 1.6 1.2e+02 4.1 0.3 6 23 239 256 237 256 0.92 3 12 0.0022 0.16 13.1 5.5 1 19 289 307 289 312 0.90 4 12 5.7 4.2e+02 2.3 0.4 6 23 322 339 320 339 0.94 5 12 0.0014 0.11 13.7 0.3 3 23 347 367 345 367 0.96 6 12 8.4e-05 0.0062 17.5 2.3 1 23 375 397 375 397 0.97 7 12 0.0015 0.11 13.6 2.3 1 23 406 429 406 429 0.97 8 12 0.00026 0.019 16.0 0.2 1 23 435 457 435 457 0.97 9 12 3.9e-06 0.00029 21.7 3.8 1 23 463 485 463 485 0.97 10 12 0.00045 0.034 15.2 1.0 1 23 490 512 490 512 0.98 11 12 3.3e-06 0.00025 22.0 4.4 1 23 518 540 518 540 0.97 12 12 0.00016 0.012 16.7 2.9 2 23 547 569 546 569 0.95
Sequence Information
- Coding Sequence
- ATGGCTTTGGTTCTAAAAGATCTTTGTCGACTATGTGCTAAGAAACACGAATTCTCGAAGGATTTATTGGATGAAAGTAATAgacatttattgaaattaatacaaGATTTTATACAAATCGtcgtTTATGATAACGACAATTTATCATCTAAAATTTGTTTGGATTGTGAAGAAAAAATGATTTCCTTTCAACTATTCGTACTTGAGTGCTATAAGGTCCAAGAAACCCTGAAGAAGATGTATGAAGATAGTTTTGATTCCTTCGATATAAAACTTGAAAAGGTGCCTATAGACTATGACATGGCAATCAAATCTGAGGTTAAAGATGAAGTCACCGCTGAAGATATTGTAAGTGCACTGAATAATGATGCTTCGTTATCAGTGATAGATGCTTATCCAGATAGTAGTGATACTGACATCcaaaatgatgatgttgatattCATAATGgagatgaagatgatgatacTGATGATGAAGAATACAAGATAGCCCTTGCAGCCCTCAAACCAGTTAAAATGAAGCGAATTAGAAAAAAGGAAATAACAGAAGAAGAAGCAAAGGAATTCCATCAAGTTCTAAAGAAGCCGAATTTAAAAGTAAAGGACTTTGTAAAATTACAATGCATGTATTgtgaagaaaatttaaaaacttgGAATAGTTTACATGCCCATTGTACAAGGAAGCACAAAAAAGAACCTTCAGTGTACTGTTTGTGTGGTTTTGTTGTGAGATCTAAAAGTGTTCTTTACAAACATGTATCAGATCACAAGCTTGAGAGTAGAAAATTAAAGATGGATTCAGAAACAGGCGATGAGAcgcatgatgttaaatattcAAATCTGAATGTTAAAGATTTTATAAGattcgTATGTCCAAAATGTGATAAACAGTGTTCAAGTTGGTACAGTCTAAAAACTCACTGTGAAAGAACTCATAAAATAATGCCCACGGTTTCATGTAGCTGTGGCATTACTCTTAAATCAAAGTCTGTTATGTATAAGCATGTACAGGACCATAGAAATCCAAATTTACTAGCcTGCGATAAGTGTCCGCGTATTACAAAAACTTTAGCCGCCTTAAATAAACATAAGATGAGACATATACCAAAGTCTGAAAGGAAATTCTGTTGCGGCTCATgtgataaaattttcaattctAAAGATGCATTAAAATCTCATGAACGATCTCATATACCAATAGAGGAACGTAAAATTTATCATTGTGAGACGTGCAATATGAAATTTACAACACGATCTTCGGCTGCGTCCCACAAGCGCGTTGTTCACGACAAGATAAAGGGGTACGTGTGTGATCTGTGCGGGTACGCCTGTGGCACAAACGGCGAGTTACGACAGCACCGCGCCATACACAGTGACGATAAACCTTTCGCTTGCAGGAAGTGTTCTAAACGCTTCAAAACATATTCAAATCTAAAGACACATATGGACACACATGAAGAGACGTCGTACGAGTGCTATATATGCCGACGCGTGTTGAACAGTCGTCGCACGCTCCGCAAACATCTCCTTGTACACGAAGATAAGTGCAGGCATGTTTGCACTTACTGCAATAAGGCCTTCAAGAGGAGGCAGACACTAAAGGTGCACATGTACACCCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGCTCACGCAGCCGCACGACGCCTATGCTCCCTACAATCACATAGCTATGCAGGAGGATTACAGCATCAAGAACGATATGGCCGGTGTAAGTGTACCAGTGGCAAAGAACGAAGTCGAGGCTATGTAA
- Protein Sequence
- MALVLKDLCRLCAKKHEFSKDLLDESNRHLLKLIQDFIQIVVYDNDNLSSKICLDCEEKMISFQLFVLECYKVQETLKKMYEDSFDSFDIKLEKVPIDYDMAIKSEVKDEVTAEDIVSALNNDASLSVIDAYPDSSDTDIQNDDVDIHNGDEDDDTDDEEYKIALAALKPVKMKRIRKKEITEEEAKEFHQVLKKPNLKVKDFVKLQCMYCEENLKTWNSLHAHCTRKHKKEPSVYCLCGFVVRSKSVLYKHVSDHKLESRKLKMDSETGDETHDVKYSNLNVKDFIRFVCPKCDKQCSSWYSLKTHCERTHKIMPTVSCSCGITLKSKSVMYKHVQDHRNPNLLACDKCPRITKTLAALNKHKMRHIPKSERKFCCGSCDKIFNSKDALKSHERSHIPIEERKIYHCETCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFACRKCSKRFKTYSNLKTHMDTHEETSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCTYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKLTQPHDAYAPYNHIAMQEDYSIKNDMAGVSVPVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707233;
- 90% Identity
- iTF_00405302;
- 80% Identity
- -