Basic Information

Insect: Pelosia muscerda
Gene Symbol: PRDM15
Assembly: GCA_963691645.1
Location: OY829125.1:3664486-3677746[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.078 5.8 8.2 1.1 1 23 243 265 243 265 0.98

2 9 0.074 5.5 8.3 0.1 1 23 272 294 272 294 0.94

3 9 0.00022 0.016 16.2 1.2 2 23 328 350 328 350 0.96

4 9 1.6e-05 0.0012 19.8 0.1 1 23 359 381 359 381 0.98

5 9 3.4e-05 0.0025 18.8 1.4 1 23 386 408 386 408 0.98

6 9 0.0015 0.11 13.6 0.6 1 22 417 438 417 442 0.93

7 9 8.6e-05 0.0064 17.5 0.2 1 23 447 470 447 470 0.96

8 9 7.1e-05 0.0053 17.8 2.8 1 23 476 498 476 498 0.97

9 9 1.7e-05 0.0012 19.8 1.6 2 21 508 527 508 528 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.078	5.8	8.2	1.1	1	23	243	265	243	265	0.98
2	9	0.074	5.5	8.3	0.1	1	23	272	294	272	294	0.94
3	9	0.00022	0.016	16.2	1.2	2	23	328	350	328	350	0.96
4	9	1.6e-05	0.0012	19.8	0.1	1	23	359	381	359	381	0.98
5	9	3.4e-05	0.0025	18.8	1.4	1	23	386	408	386	408	0.98
6	9	0.0015	0.11	13.6	0.6	1	22	417	438	417	442	0.93
7	9	8.6e-05	0.0064	17.5	0.2	1	23	447	470	447	470	0.96
8	9	7.1e-05	0.0053	17.8	2.8	1	23	476	498	476	498	0.97
9	9	1.7e-05	0.0012	19.8	1.6	2	21	508	527	508	528	0.96

Sequence Information

Coding Sequence: atgtctTCGTTTTTATGCTTTATTTGCCACAACGCTGTAAATGCCGACACAACTGAAGACACTCGAGAAAAGTACAGAGAAGTTGTGGAtatgaatCTATGCCCCGACTCCCACCTCTGTTATATATGCTGCCACATGGTCAATAAGCTGTGGTTATTCAAGTCTGTATGTATTAAAAGAAGCCATGAATATCCTGTGTTGTTTAGtgaaAAATGCACAATAAACCTCCATAGAAGTGATATTGATATATTAACATTGTGTTCTGAAGATACCTGCATACCAAACCTGGATAATAACGATCATCGAGATCACAGTAACGATTACGTTAAATTAGAAGATAAACATAACGATTTTGATGACTACATACCTGATAATATCACTGATAACGATTACTCTGCTGTCATAGAAACTTATAACTCTGAGCTGGTGTCAACGGAAACTAGTAAGATGGAAGCAACGATTCAATATGACAATGATGCTGATTTTAACGATATTAGAGAGTATGACACATATATAGGTGAACATTTAGAAGCAAATGAAAGTGAATTAAATGAAGATGATCTAAGAAATGAAACGtatcaatttaataatattacagaaGCAACAGAAGACAAAACTAATACTAAAGAGGTCGATGAGGATTACGAGAAGACTCTTCTCACAGTAGAAGAACAGAAAGGGGAGTTAGAAGCTCAGAGAAGGAGCAAGAAGTACTTAGATGCAGAGTTCAAATGCTACAACTGTGCCTTGGGATTTCTATTTAAAGATTCCTATCAAGCACACATGATGAGGCATGAAGAGtCTAACGGCGAGTACTTGTGTCTGCTGTGCACGCTTCGCTTCGCAAGCCCCGGCGTGCTTCGCTCGCACAAGGCCGTGCACAGAGAGCGGTACACTTGCTGTCATTGCGGTGTGAAAGTGCGAAAGAGACAGCGAGACACACATGCGAGGAAATGTCATAGGAGAGAAGAGGACAGCGCTTCGTGTCATCTATGTGGAAATGTGTTTCAAGACGCCAGTGGTCTCCAACAACACCTAAAGCGGTTCCATATGAGCAAAACCAGTAATCGAACCTACTCGTGTTCCGTCTGCGGCAAGAATTACGAAGACCAAGCCGCCGTGAGAACACATATGATaaccCATATCCAACGCAAGTTCTCCTGTGACCAGTGTCCAGCCAGGTTCAGTAGTCCATACACCCTCACCCAACACAAGAAGAAGCACACCGGCGGTCCAATGGACAACACACACTCGTGCGAGTCCTGCGGGGTCCAGTACAGCAGCAGGAAGAGTCTACTGGCGCACCTGAGAACTGCTCTGCAGCATCAGGACACTGTCTACGACTGTCCAATATGCAGCCGCATATGCCCTAACTCCAGTGCCCTGTCATCCCACATGGCGCGGGTCCACTCGCCCAACAAGGACTTCGCGTGTAGTCTGTGCGACCATAGGTTCACGAGCCGCAAGTCCCTCTTACGTCACGTGAGGGAACACACCTCACCCGCGAGGGTCAAAGATGCTCAATGTCACCTCTGCGGGAAGAATTTTAAGggCAACAGCAAACTCAACAGACATCTCCGAGAAGTGTGTGGCAAAGACAGACTGGAAGAAGAACTTTCTGCGTATCAGGACCTTGGGATTTTACAGAGGTAG
Protein Sequence: MSSFLCFICHNAVNADTTEDTREKYREVVDMNLCPDSHLCYICCHMVNKLWLFKSVCIKRSHEYPVLFSEKCTINLHRSDIDILTLCSEDTCIPNLDNNDHRDHSNDYVKLEDKHNDFDDYIPDNITDNDYSAVIETYNSELVSTETSKMEATIQYDNDADFNDIREYDTYIGEHLEANESELNEDDLRNETYQFNNITEATEDKTNTKEVDEDYEKTLLTVEEQKGELEAQRRSKKYLDAEFKCYNCALGFLFKDSYQAHMMRHEESNGEYLCLLCTLRFASPGVLRSHKAVHRERYTCCHCGVKVRKRQRDTHARKCHRREEDSASCHLCGNVFQDASGLQQHLKRFHMSKTSNRTYSCSVCGKNYEDQAAVRTHMITHIQRKFSCDQCPARFSSPYTLTQHKKKHTGGPMDNTHSCESCGVQYSSRKSLLAHLRTALQHQDTVYDCPICSRICPNSSALSSHMARVHSPNKDFACSLCDHRFTSRKSLLRHVREHTSPARVKDAQCHLCGKNFKGNSKLNRHLREVCGKDRLEEELSAYQDLGILQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00638038;
90% Identity: -
80% Identity: -