Pmus021867.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829122.1:2782980-2796860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.038 2.8 9.2 2.3 1 23 235 257 235 257 0.98 2 11 0.0048 0.36 12.0 0.5 1 23 264 286 264 286 0.98 3 11 3.3 2.5e+02 3.1 3.0 1 9 290 298 290 313 0.76 4 11 4.6e-05 0.0034 18.4 3.0 1 23 318 341 318 341 0.92 5 11 0.0027 0.2 12.8 0.3 3 23 349 370 348 370 0.91 6 11 1.5e-06 0.00011 23.0 0.3 1 23 383 405 383 405 0.97 7 11 0.00066 0.049 14.7 0.2 1 22 411 432 411 436 0.93 8 11 0.0021 0.16 13.1 1.8 2 23 445 467 444 467 0.95 9 11 6.6e-05 0.0049 17.9 0.7 1 23 473 496 473 496 0.97 10 11 6.8e-06 0.0005 21.0 1.0 1 23 505 527 505 527 0.99 11 11 0.007 0.52 11.5 0.1 1 19 533 551 533 556 0.89
Sequence Information
- Coding Sequence
- ATGTCTAATCCAAAAAGCTATTGTTTTGGTTGTCTCTGTGACAATAATGAAAAACAAGTACGAAGTTTCGCCTTTGTTTACGGTCCACTCAGGGAATTATTTCAGATGGAGAGTATAAATCTATGTTACATATGCAAAAGGATAGCCCAACATACTGAAATGTTTATACAGAGTGTTCACATCAATCAGATTTTAATGGAAAACTTTTCTACTgctACAGATGAAACattaaaatctgtaaaactACAAACTCAACCACTAATCAACCTCAAGCAAGTAACGTATGAAGTGATAGAGTCGTCTGAAAATGATGCTAAGAATATGGAAGAATCCTTCTGTGTCCTGAATAATGTACAAAAGGGAGATGTTAAAGTTAAAATAGAGTTGAAGGAGGAGACTGAGTTATTGGAGAATTTGGAAGCGGAGTTTATTAATGAAGATGATGAATTTCCTGAAATGTATGTGAAAGGGGAAGAGGATTTTCCTATTACTACAATGGTAAAGGAAGAAATAGGAAGTGAAAGTACTGAcactttaaatcttttaaaaccACGtccaacaaaaaaaaagaaacttaagAAAAAAATTGAAGATAAAAGGAGTATAGAAATGCCTGAAGTCAAAACGATATATATTACTAAAACACAATGTATGGAAGAGCGAACTAGGTTGTCTAAAGATGAGCAGTATGTGGGCTCTCAGTTCAAATGTTCCAACTGTATCAAGGGGTTCAATCATGAAGGTAGCTACGACACACACATGGAGAAACATAACGAGAGCAATGGTGATTTCGAATGCGACATATGCAAACAGAGAATGGATTCAGAAGATAAACTAGTCAGCCACATGCGATATCATTTTATTCGATACAAATGTCCAATATGTGGTATTACTCGCCACTGCCGGAAGACGATTAAGGAGCACTACTCCGTGTACCACCTCGGAGCCAAGCATAGTTGTCAGGAGTGTTACAAGGTCTTCAAACGCAAGAACTCTCTGCGTCGTCACGTGGTGGTGCGGCACGCGCGGCGCGAGCGCGCGTCGTGCGCACACTGCGCGCGCTCCTACGTCGACAAGGACGCGCTGCGGGCGCATATCGTGCAGAAACATACCAAGGCTGTATCGGCAGTAGAGGTACTTAAGAAGTACGTGTGCCCTGAATGTGGGATGCGGTACAAAACACCATCACAGCTTCGTAACCACAGCATCAAACACTCAGACATACGCAAGTTTTATTGCGTTGAGTGTGACAAgaGCTTCAAATCGGAAGGCATATTGAAAACACATTTAAAAACCGCCGCTATCCATTGTAACTATAAGGAATTGCCgtTGAGCTGTTTGCACTGTGAGAAACGCTTTGCTAATCGCCGCGACGTCGAACAGCACACGAACCGGGTACACCTCAACGTCAAACCTTACAGATGTGACCGCTGTGACAAGGCTTACGTGAACTCATGGGCGTTGAAAGACCACAAGCGATACACTCACGAGGGTTACAAAAGACCCCTCCAGTACCAGTGCACAATGTGTGACAAGGCATTCGATCGCAATCAAATACTCAAAAGTCATATAAGAACCCACACAGGAGAACGCCCTTACCAATGTCCAAAATGTCCCGCACAATTCAGTCAAGCCAGCATTCTTAGAACACACGATCGTTTAATACACCTAAAACTCACTAGGGATGGAAAACCAAAGATGGGTGCCATGAAATAG
- Protein Sequence
- MSNPKSYCFGCLCDNNEKQVRSFAFVYGPLRELFQMESINLCYICKRIAQHTEMFIQSVHINQILMENFSTATDETLKSVKLQTQPLINLKQVTYEVIESSENDAKNMEESFCVLNNVQKGDVKVKIELKEETELLENLEAEFINEDDEFPEMYVKGEEDFPITTMVKEEIGSESTDTLNLLKPRPTKKKKLKKKIEDKRSIEMPEVKTIYITKTQCMEERTRLSKDEQYVGSQFKCSNCIKGFNHEGSYDTHMEKHNESNGDFECDICKQRMDSEDKLVSHMRYHFIRYKCPICGITRHCRKTIKEHYSVYHLGAKHSCQECYKVFKRKNSLRRHVVVRHARRERASCAHCARSYVDKDALRAHIVQKHTKAVSAVEVLKKYVCPECGMRYKTPSQLRNHSIKHSDIRKFYCVECDKSFKSEGILKTHLKTAAIHCNYKELPLSCLHCEKRFANRRDVEQHTNRVHLNVKPYRCDRCDKAYVNSWALKDHKRYTHEGYKRPLQYQCTMCDKAFDRNQILKSHIRTHTGERPYQCPKCPAQFSQASILRTHDRLIHLKLTRDGKPKMGAMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -