Pmus023621.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829124.1:8677168-8683301[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.81 60 5.0 1.0 3 23 2 23 1 23 0.89 2 31 0.73 54 5.2 0.8 2 23 49 71 48 71 0.90 3 31 0.21 15 6.9 0.3 2 23 94 115 93 115 0.95 4 31 8.6e-07 6.4e-05 23.8 1.2 1 23 119 142 119 142 0.96 5 31 0.17 12 7.2 1.4 3 20 149 166 148 167 0.93 6 31 6.5 4.8e+02 2.2 0.6 1 20 175 194 175 198 0.73 7 31 0.068 5.1 8.4 0.1 3 20 231 248 230 249 0.95 8 31 0.21 16 6.8 0.1 2 23 279 301 278 301 0.90 9 31 3.9 2.9e+02 2.9 0.6 3 23 325 346 323 346 0.93 10 31 0.014 1 10.5 2.8 2 21 351 370 350 373 0.93 11 31 0.037 2.7 9.2 0.4 1 21 377 397 377 398 0.94 12 31 1 76 4.7 0.7 5 23 409 428 401 428 0.82 13 31 3.6 2.7e+02 3.0 0.5 3 22 478 497 477 499 0.88 14 31 1.9 1.4e+02 3.9 0.1 2 23 526 548 525 548 0.91 15 31 1.3 97 4.4 6.8 3 23 576 596 575 596 0.97 16 31 0.00025 0.019 16.0 1.7 1 21 600 620 600 623 0.96 17 31 0.28 21 6.5 0.1 1 21 627 647 627 648 0.93 18 31 0.11 8.3 7.7 0.4 3 21 657 675 655 678 0.89 19 31 0.0004 0.03 15.4 1.7 1 23 685 708 685 708 0.97 20 31 0.71 52 5.2 0.7 1 23 713 735 713 735 0.94 21 31 0.42 31 5.9 0.2 1 12 741 752 741 754 0.91 22 31 3.5 2.6e+02 3.0 0.6 2 20 783 801 782 802 0.91 23 31 0.026 1.9 9.7 0.1 2 23 831 853 830 853 0.94 24 31 0.4 30 6.0 2.2 5 23 883 901 880 901 0.93 25 31 0.0048 0.36 12.0 3.4 1 21 905 925 905 928 0.94 26 31 1.4 1.1e+02 4.2 0.1 1 21 932 952 932 953 0.92 27 31 0.063 4.7 8.5 0.3 1 23 960 983 960 983 0.90 28 31 0.19 14 7.0 3.4 1 23 990 1013 990 1013 0.94 29 31 0.15 11 7.3 0.3 1 23 1018 1040 1018 1040 0.97 30 31 0.0027 0.2 12.8 0.5 2 20 1046 1064 1045 1067 0.95 31 31 0.00013 0.0098 16.9 1.3 1 23 1073 1096 1073 1096 0.97
Sequence Information
- Coding Sequence
- ATGTGCGTATTCTGTTGCGAAGAGTATAGTGAAGCTGTGAACTTTCGTAAACACATGAGGGAAGAACACGAATTTTTCAAAACGGAATACGCTTTCGCGCACTGCAGCCTTGAAGTTTATCTTAAAATAGATTGCACTGAACTACAATGCAGGACCTGTTCAGAAACTTTTGACAAAATAGACCCCTTGGCTCACCACTTAACTGACAAACACGATATCAAATTCAATTTCGATGCTCATTTGGGCGTTCATCCGTACAAATTTTTACAAGATAAGATCATGTGCGGCGTGTGCGATATCAATTTCCCTTGCATGAGACAACTAAGCCGACATATGGCGGTGCATTTCCAGAACTTCACTTGCGACTTTTGTGGCAAATCGTATACGACCAATTCATCGTTACAAGTACATCTTAGATTCGGGCACACAACAGAAGGTAGAATTTGCAGAAAATGCAAACGGACTTTTAAAACTTTGGAAGAGAAGAAACACCATGTTGCTGCTACATACAGCTGTTGGTTGTATGCTTGTGGAATGTGTAATTTAAGATTCTTAACATGGCATCTGAAAGAAGAACATTCAATAAAAGTTCACGAATTGGATCCACATAGAATGGCGAAACGGAACGCGGCGCTAGTCTTACAATACTCGACAGTATATCCATTCAGGTTACGGGGGCGAGTTTTATTATGCGTCTACTGCAACGAGGGTTATGAAGATCCCGCACATTTTAGGAGACACGTCGATTGTAATCATAAAAAGTTTAACGTATCAGCAGCATTTGCGCATGTAGCTAAAGGCAAAGACTACCTCAAGGTTGACTGTGCGAATTTAGAATGTAGGTTTTGTGGCGAACCTTTCTCCAATGTTAAAGATACGGCGGTACATCTTTCAGAAGAGCATGGTCTGAAATTAAACCTCGATTATGATATAGCATTACAATGTTACAAATTAGACAAGGACAAATGGTTCTGTCTCCTTTGCGATGCGAAGCTACCTAATATAACAAAGCTCTGTCGTCACACTGTAACAGCTCATTATCAAAAGTGCACGTGTGATATTTGTGGTAAAACTTACATGACCATTGAAGGCTTGAGATACCACATTAGATGTAGCCATTCAGGAAAATTCTCGTGTCGAAAATGCTGGAAAGAATTTTCTACCACCGAAGAAAGAATAGAACACCAGAAAATATCTAAACGCTGCTGGAACTTCGGTTGTATATACTGTGGGGAAAGATTTCAATCGTGGGAGATGAAAAATAAGCATTTAGTTGAGATGCATGATTGTCCAGAAGTTAAATATCCATGCTCGGATTGCGACTCTGTATTTCTAAAAATGGAACCACATTTAACGGCGAAACGGAATGCGGAGATTGTGTTACAATACTCAACAGTATATCCGTTCAGGTTGCGAGGAAAGGCTATGCTATGTGTCTACTGCTGTGAGGAATACGAGGATCCCTCCGATTTTAGGAAACACGTCGACGATAATCACAAGCAATTTACTGTATCTACAGCGTTTGCCCATATTGGTAGCGCGAAAGACTACCTCAAAGTTGATTGTACTAACTTAAAGTGCAGATTATGTTTCGAAGATTTCTCCAATATCGAGGAAGTTGCCGATCATCTTGTAAAAGAACACAACCGAAAAGAAACTAGAAAATTGTGCCTCGATTTTGATATAGGTCTGCAACCCTACAAATTGGAGAAAGATAAATGGTTATGTTTTCATTGCAATAAAAAGCTTCCTACTTTGACAAAACTCTGTCGTCATACTACTTCGCATTATCAGCATTACACGTGTGATATTTGTGGACGGAGCTATATGACCAATGATGCTTTAAAGTATCATATTAAATGTAGTCATTCAGGAAACTACGTATGTCGAAAATGTTGGAAAGACTTCCCATCGATTGAAGAAAAAAGGGAACATGTTAGAATATCCAAAAACTGTTGGGCTTTTGGATGTGTTAATTGTGGGGAGAGATTTCAATCTTGGGAGCAAAAACAGAAACACTTAGTTGATAAACATGACTGTCCGGAGACGAGTTACCCGTGTCCTGAATGTGATAGGACATTCCAAACTAGAAAGCGATTTTATAACCATTACAAAATGGCGCATACTGACGAAGGGTACATTTGTTCTTGTTGTGGTTTGAAGTTTGGGGCCAAAAATCAATTAGAAGACCATAGGCTAGGACATACTGGAGAGAAGCAATTTAAATGCTTGGTGTGTTCCAAAGCTTTTACACAATTGGAACCACATTTAATGGCGAAACGGAACGCGGCGATAGTGTTGCAATACTCTACAGCTTATCCGTTCAGGTACCGAGACAAGACCTTCCTATGTGTCTACTGCTGCGAGGGCTACGAGGATCCCATTCATTTAAGGAGACATCTCGATTGTAATCATACAATGTTCACTGCCTCGTCGGCATTCGCCCACGTCACTGGAAAAGACTACCTGAAAGTCGATTGTACCAACCTTACGTGCAGGCTATGTTCTAAACCTTTCCCCAACATAGACGATGTTGCTAAACATCTGAAAGCAGAACATGATTGTAAAGAAACTCGGCAGCTTTGCCTTGATTTTTATATAGCTTTGCAACCTTACAAATTGGTGAAAGACAAATGGATTTGCATCCTGTGCGATAATAAGTTTTCTACTGTAACTAGGCTTTGTCGCCATATGTCGTCGCATTATCTACAGCACACGTGTAATGTTTGTGGTAAACGTTACATAACAGAAGACGCTTTAAAATACCATACAAAATGCAGTCATTCTGCAAACTTTCTGTGCCGTAAATGTTGGACGGACTTTCCTACTGCCGAAGCAAAAAAAGAACACTTACGGGAATCGAAAAAATGTTGGGGTTTTGTTTGTCTTCAGTGCGGGGTTAGATTTCAGTCCTGGGAATTGAAGCAAAAACATCTAGTTGAAAAACATAACGGTCCAAAGGCCAGTCATTCTTGCCCAGATTGTGGAAGCAACTTTCAATCAAGAAAACCATTTGTCCATCATTACAAACTTATGCATACTGATGATGGATTTATATGTTCGGAATGCGGTTTGAAACTTCTGACGCAGAAGGaattagattatcatatgctTTCGCATGCAGATAAAGAGATTAAATGTACAGTGTGCTCCAAAACTTTGGCAAGCAAAAAGAGTCTTAACCAACATATGTGGCTTCACAGTGACACTAAacgatttatttgtttgttgtgTGATAAGCAGTTTGCACTGAAACGAACTCTAAAGACCCACATGAAAACCTTGCACCCTCAAGTTTCATTAAACTTTTAA
- Protein Sequence
- MCVFCCEEYSEAVNFRKHMREEHEFFKTEYAFAHCSLEVYLKIDCTELQCRTCSETFDKIDPLAHHLTDKHDIKFNFDAHLGVHPYKFLQDKIMCGVCDINFPCMRQLSRHMAVHFQNFTCDFCGKSYTTNSSLQVHLRFGHTTEGRICRKCKRTFKTLEEKKHHVAATYSCWLYACGMCNLRFLTWHLKEEHSIKVHELDPHRMAKRNAALVLQYSTVYPFRLRGRVLLCVYCNEGYEDPAHFRRHVDCNHKKFNVSAAFAHVAKGKDYLKVDCANLECRFCGEPFSNVKDTAVHLSEEHGLKLNLDYDIALQCYKLDKDKWFCLLCDAKLPNITKLCRHTVTAHYQKCTCDICGKTYMTIEGLRYHIRCSHSGKFSCRKCWKEFSTTEERIEHQKISKRCWNFGCIYCGERFQSWEMKNKHLVEMHDCPEVKYPCSDCDSVFLKMEPHLTAKRNAEIVLQYSTVYPFRLRGKAMLCVYCCEEYEDPSDFRKHVDDNHKQFTVSTAFAHIGSAKDYLKVDCTNLKCRLCFEDFSNIEEVADHLVKEHNRKETRKLCLDFDIGLQPYKLEKDKWLCFHCNKKLPTLTKLCRHTTSHYQHYTCDICGRSYMTNDALKYHIKCSHSGNYVCRKCWKDFPSIEEKREHVRISKNCWAFGCVNCGERFQSWEQKQKHLVDKHDCPETSYPCPECDRTFQTRKRFYNHYKMAHTDEGYICSCCGLKFGAKNQLEDHRLGHTGEKQFKCLVCSKAFTQLEPHLMAKRNAAIVLQYSTAYPFRYRDKTFLCVYCCEGYEDPIHLRRHLDCNHTMFTASSAFAHVTGKDYLKVDCTNLTCRLCSKPFPNIDDVAKHLKAEHDCKETRQLCLDFYIALQPYKLVKDKWICILCDNKFSTVTRLCRHMSSHYLQHTCNVCGKRYITEDALKYHTKCSHSANFLCRKCWTDFPTAEAKKEHLRESKKCWGFVCLQCGVRFQSWELKQKHLVEKHNGPKASHSCPDCGSNFQSRKPFVHHYKLMHTDDGFICSECGLKLLTQKELDYHMLSHADKEIKCTVCSKTLASKKSLNQHMWLHSDTKRFICLLCDKQFALKRTLKTHMKTLHPQVSLNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -