Basic Information

Insect: Pelosia muscerda
Gene Symbol: -
Assembly: GCA_963691645.1
Location: OY829126.1:1694935-1697739[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.3 97 4.4 1.1 5 21 224 240 222 241 0.93

2 12 0.016 1.2 10.4 1.8 2 23 263 284 262 284 0.97

3 12 0.00012 0.0091 17.0 3.4 1 23 298 320 298 320 0.98

4 12 3.4e-05 0.0026 18.8 0.9 1 23 328 351 328 351 0.96

5 12 0.00029 0.021 15.9 0.7 1 23 357 379 357 379 0.98

6 12 0.0014 0.1 13.7 5.8 1 23 385 407 385 407 0.98

7 12 1.5e-07 1.1e-05 26.2 1.3 1 23 413 435 413 435 0.96

8 12 4.1e-05 0.003 18.5 0.4 1 23 441 463 441 463 0.99

9 12 4.5e-07 3.3e-05 24.7 0.3 1 23 469 491 469 491 0.98

10 12 2.4e-05 0.0018 19.3 0.4 1 23 497 519 497 519 0.99

11 12 4.4e-05 0.0033 18.4 2.2 1 21 525 545 525 547 0.96

12 12 3e-06 0.00022 22.1 0.7 1 23 553 575 553 575 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.3	97	4.4	1.1	5	21	224	240	222	241	0.93
2	12	0.016	1.2	10.4	1.8	2	23	263	284	262	284	0.97
3	12	0.00012	0.0091	17.0	3.4	1	23	298	320	298	320	0.98
4	12	3.4e-05	0.0026	18.8	0.9	1	23	328	351	328	351	0.96
5	12	0.00029	0.021	15.9	0.7	1	23	357	379	357	379	0.98
6	12	0.0014	0.1	13.7	5.8	1	23	385	407	385	407	0.98
7	12	1.5e-07	1.1e-05	26.2	1.3	1	23	413	435	413	435	0.96
8	12	4.1e-05	0.003	18.5	0.4	1	23	441	463	441	463	0.99
9	12	4.5e-07	3.3e-05	24.7	0.3	1	23	469	491	469	491	0.98
10	12	2.4e-05	0.0018	19.3	0.4	1	23	497	519	497	519	0.99
11	12	4.4e-05	0.0033	18.4	2.2	1	21	525	545	525	547	0.96
12	12	3e-06	0.00022	22.1	0.7	1	23	553	575	553	575	0.97

Sequence Information

Coding Sequence: atggaaCTAAGTGTACAGTTATTCGATAAAATATGCCGAATCTGTTTAGTACAATCTGGCAACTTGAAATCCCTTTTAACAAAGACAGAAGGCCAAGATCGGAACTTACTTGAAATACTTGGTTTTACGGCCAATATTGATATTAAACTCGAAGATAGTTTGCCAAAACAAGTGTGTAGTGCGTGCGAATCTATTATGTGTCAGGCTGATGCATTTAAACGGCGTTGTCATGAGTCTGAGGcgattttaaataatgtttaccGAAATACAGCTAAAGTCGTCGAGCCATCTCAAGATGCTCATAACTTCTCTATCAAAGTTGAAAACACAggtttaaaagaaaaattaatcGAGTATGGTACTTTAGTGTCACCAATTTCCTCAAATAGCAGTGGTAATGATGGTTTCActaagaaaaatcaattaatatcAGAAGTACCAGTATGTTCAACATCAGATCTTAGTTTTAACAAATTTGACACACCTGAGTTCCCTGAGAAGTGTGAGTTACCTGTCAAAGAAGAAACAGACAATAACACAGACGATGGGGAATATTTGAATGATTTTGACAATAGAGATCAGTTTGAAAATGGTACTTTTGATAAACAAGAGAAGTCAGATGCAAAACCTAAACAAAAGAGCAAAAAGCTTGGTATCCGCTACGAATGTTATTGCCATGCTCAGTTTCAGAGTAAAGACAAGTATAATAAACATTTGAAAGAACAAAAATGTGATGCCTATAAagtattaaaattgaataagggtaaaacaattaaaaatgaaattcaatgTACAAAATGCCATTCGTTGTTCACAACTTTGTATGCTTGGAAACAGCACCAACTCATACATGGTGACGAAAACTCGACTTTAAATGATAATATAGAATTATTTCGTTGTTCGTTTTGTTTAcgtcaatttaaaaataaaacttctctATCGGCTCACATGCAGAGGCACGAAGAAACAGACAATATAAAACATGTTTGTGAAATCTGTAAACGTGAATTCAAATATAAAGCATATTTAGAAAACCATGTGTTAACTGCACATTCTAGAACGGACGGTTTCACTTGTGATATATGCATACAAAGTTTCTCAAGCAAAGAAGCCCTAGAGACTCATAAGAAAAGTCATGAAAACGATAAAAAGCACCGTTGTACAGTCTGTAGTAAAGGTTTCTACATGTTATGTACTTTGAAAGAGCATATGCGGACACATACTGGTGAGAAGCCGTTCTTGTGTTCTCAGTGTGGCAAAGGTTTTAGTCAGAAGACGAATTTGGCACAACATATGAGGAGACATCAGGGTTTGAAGCCATTCAAATGTGATAGTTGTGAAAAGGGATTCGTCTCCAAAGGCGAGCTGGACGCTCACACACGCAAACACAGCGGCGCACATCCATTCGTCTGTGATGACTGTGGAAACGGTTTCACAACATCAAGTGCTCTAGTCAAACACAGAAGAACCCACACCGGGGAACGTCCTTACCAATGTGATCTATGCCCCATGAGATTCGCAGCCTCCGGAACGTTGAAAAATCACCGAAGAACTCATACAGGGGAACGGCCGTTTCAATGTTCGTACTGCGAGAAGGCTTTTGTTCAAAGAAATGACTTGATTTCTCATATCAGGTGCCATACTGGTGAGAGGCCGTACATATGTACACAGTGTGGACAGTCCTTTAGAAAAGCTAGTGGTTTGAAGTCTCATTTAAAGTTGCATATTAAAGACCCTGTAATCGGTGTGAATCAAGCTTTAGTTGCGGCTATGCAATTGGCCGAGCAGTGA
Protein Sequence: MELSVQLFDKICRICLVQSGNLKSLLTKTEGQDRNLLEILGFTANIDIKLEDSLPKQVCSACESIMCQADAFKRRCHESEAILNNVYRNTAKVVEPSQDAHNFSIKVENTGLKEKLIEYGTLVSPISSNSSGNDGFTKKNQLISEVPVCSTSDLSFNKFDTPEFPEKCELPVKEETDNNTDDGEYLNDFDNRDQFENGTFDKQEKSDAKPKQKSKKLGIRYECYCHAQFQSKDKYNKHLKEQKCDAYKVLKLNKGKTIKNEIQCTKCHSLFTTLYAWKQHQLIHGDENSTLNDNIELFRCSFCLRQFKNKTSLSAHMQRHEETDNIKHVCEICKREFKYKAYLENHVLTAHSRTDGFTCDICIQSFSSKEALETHKKSHENDKKHRCTVCSKGFYMLCTLKEHMRTHTGEKPFLCSQCGKGFSQKTNLAQHMRRHQGLKPFKCDSCEKGFVSKGELDAHTRKHSGAHPFVCDDCGNGFTTSSALVKHRRTHTGERPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGERPYICTQCGQSFRKASGLKSHLKLHIKDPVIGVNQALVAAMQLAEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00636751;
90% Identity: -
80% Identity: -