Pmus019552.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829118.1:10377194-10395835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8e-05 0.0021 19.0 6.8 1 23 196 218 196 218 0.98 2 13 2.8e-06 0.0002 22.2 0.2 3 23 232 252 231 252 0.98 3 13 5.9e-05 0.0044 18.0 2.1 2 23 261 282 261 282 0.98 4 13 0.00028 0.021 15.9 1.6 3 23 290 310 288 310 0.95 5 13 5.3e-06 0.00039 21.3 0.8 1 23 316 338 316 338 0.98 6 13 1.9e-05 0.0014 19.6 8.6 2 23 345 366 344 366 0.97 7 13 4.3e-05 0.0032 18.5 0.8 1 23 372 394 372 394 0.97 8 13 1.3e-05 0.00093 20.2 1.6 1 23 400 422 400 422 0.99 9 13 0.0011 0.081 14.0 3.2 1 23 428 450 428 450 0.98 10 13 0.0014 0.1 13.7 0.8 1 23 456 478 456 478 0.97 11 13 3.7e-05 0.0028 18.7 0.5 1 23 484 506 484 506 0.98 12 13 2.1e-06 0.00016 22.6 0.6 1 23 512 534 512 534 0.99 13 13 0.01 0.74 11.0 5.0 1 23 608 630 608 630 0.98
Sequence Information
- Coding Sequence
- ATGGCTACTACTGCAGCTATTGTCAATAAACTTCAAAATTTGGATTTTAGCAAAATATGCCGAGCATGTTTGGAGATAAAAAAGGACATGAGACCTTTATTTGAGCAGTTGACTGCTACAATGCTGATGGGGATATCGAAAGTACAGGTGGAAGTCGGCGATACCCTGCCTTCGCAGCTGTGTCTACAGTGCGTGCACCAAATATCGCGCTGTCACGCCTTCAAGGAAATGGTTGAGAGGCATGACGTCGCTCTTCGAGAACATTCCAAGATTCTCGCTGAGCAGGCCTACAAAATTGAGAGGGAAGAGAAAGTGAAACTAATGAACATGAACTGCCAAGAGCCATACATTGAGTACATGGAGGTGCCTCTGACCAGTGCTAATCAGATACTCGACGGGTTCTTCAACGCAACACCAGCTCCAACGCCGCCTTCAGGGCCTGAACAGGAAATTAAAGAAGACTACGAAGAAAAGGCGGACAGTGCTTCAACTTCaccaaaagacaaagaaggcttGAACTCTGATGAGGAGAACTATCTTCAACTGGTGGTATTCCAAGCCACGTCCACCGTATCCCCTGGCCGGCACGTGTGCAATCTATGCCATAAGGAATTCAAACATCCAAGGTGGTTGAAACAACACATGAGGTCACATACTAACTGGATAAAGGCGAATTGCAAGAAACCACCGATGTGTCCGATATGTGAGAGGACTTTCAAGGGTCCAGGAATGCTAAAGATGCATATGCGTACCCATGAACAGCGGCCTCCTAAACAGCCGACATGTTCGGTCTGCCAGCGTACCTTCCCAACCAAGACCTTACTCTACCGCCATAGACAAACACATTTCGAACAGAAGACGCATCTCTGCACTGTTTGCGACAAGAGGTTCTATAGCGGGTACGCGTTGAGATCTCATATGGCCAGGCATCGCGGGGAGAGACCATACGTGTGTTCGTCGTGCGGGAAAAGCTTCTACAATCCCACAGATTTGAagGTTCACTTCCGTCTCCACACGGGAGAAAAACCGCTAAAATGTACCGAGTGCAACAAAACATTCCGCCGGCACTCGACTTTATGCCAACACATGAAGAAACACCGAGGAATAAGGAACCATATATGCACAGTGTGCAACAAGGGCTTCTACGAAGTCTCCAAGCTTAATGCGCACATGAGAGTGCACACTGGCGAGCGGCCATACGAGTGCCAGTTTTGTTCCCGTCGTTTTGCTCAACAGTCAGCGCTGATATACCACCGACGCACTCACACGGGCGAGAAGCCGTACTGCTGCAAGCTGTGTTCAGCTCGCTTCACCACCTCCTCGGCTAGGAACAATCATATGATCACACATACTGGGAACAAGAGGTTCGTGTGCCCGGTGTGCCTGAAGGGCTGCACGTCGCGCACTGAACTGCGGGTGCACGCGAGCAAGCACACGGGCGAGAAGCTGTTCGAGTGCGGCCAGTGCGAGCAGCGCTTCAGCTCCGCCTCGTACCTCGCCGTGCACCGCCGGTACCACTCCGGCGAGATGAAGTACCAGTGCGCCGTCTGCGGGAAAGGCTACGTGGAATCCAGCTCGTACAAGAAGCACATGAAGACTCACGAGGCGAAGGCCGACACGGAGTCTTCTCACTCGGAGTCCAACTGCGCCGACGGCCAGCCCAAGGGCGAGGCGAGCGCCGACGTACCATCTGCTGCACCCAGTACAGACGACACGCCTCAAGTAGCCCCCGTCCAAGCTCAAGTACATATCCAAGTACAAGGTAACGAACAAACACTGCAGGTTCAAGCGCCGGCAGAgaacgccacgccacagaagaaATACAAGTGCGGCTTCTGTGTCAAGACGTATATGTACCTGCATAACTTTAAGAAGCATATGTCACTGCACACGCAGGAACGCGCACGGAACTCGGAGCAAATAATATTCCTTCAGCAACAACAGCAGCCACAGACCCAGCAACAGCAGACGCAGCAGCAggtgcaacaacaacaacaacaacaagcGCAGCAACAGCAGCAGGCGCAACACCAACACGCGCAACAGTTGCAGCAACAAGTGCAGCAACAACAAGTGCAACAAGTTCAACAGCAACAGCAGCAACAAGTGCAACAAGTACAACAACACCACCAGCAACAGCAGTTGCAACAACAAGTGTTGCAAGTTGGTAACGTGCAACAGCTCACTGTGCCGATACACGCGCAACACGTGCAACAGGGGATCACAGTTTCCGGCGTGCAGGGTCAACATCCGTATCCGGTGATCTCGTCGGTGCAGTCTCTACAGTTGCAGCAAACACAACAGGTTAACACGCAACAGCCGCAGCAACTTCAAGTGCAAGCGATACAAATACATCCTCAACACCAGCCTATACAAATACACGCGGTGGGCGTCCAACAAGTTCAGCAACAACAACTGCACGTGGCGACGTCCACGTGCCAGACCATGCTTCCTAACATATTACAGCTGCAGCCGGGCACGGTGGCGGTGTCGGGCCTGGGCGCGGGCGAGCTGGGCGGCGTCACGCACCGCATCATCCTGCAGCCGCAGCCGCAGCCCACGCACCCCGCCGTCTACACCATACACCACTGA
- Protein Sequence
- MATTAAIVNKLQNLDFSKICRACLEIKKDMRPLFEQLTATMLMGISKVQVEVGDTLPSQLCLQCVHQISRCHAFKEMVERHDVALREHSKILAEQAYKIEREEKVKLMNMNCQEPYIEYMEVPLTSANQILDGFFNATPAPTPPSGPEQEIKEDYEEKADSASTSPKDKEGLNSDEENYLQLVVFQATSTVSPGRHVCNLCHKEFKHPRWLKQHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYVCSSCGKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHICTVCNKGFYEVSKLNAHMRVHTGERPYECQFCSRRFAQQSALIYHRRTHTGEKPYCCKLCSARFTTSSARNNHMITHTGNKRFVCPVCLKGCTSRTELRVHASKHTGEKLFECGQCEQRFSSASYLAVHRRYHSGEMKYQCAVCGKGYVESSSYKKHMKTHEAKADTESSHSESNCADGQPKGEASADVPSAAPSTDDTPQVAPVQAQVHIQVQGNEQTLQVQAPAENATPQKKYKCGFCVKTYMYLHNFKKHMSLHTQERARNSEQIIFLQQQQQPQTQQQQTQQQVQQQQQQQAQQQQQAQHQHAQQLQQQVQQQQVQQVQQQQQQQVQQVQQHHQQQQLQQQVLQVGNVQQLTVPIHAQHVQQGITVSGVQGQHPYPVISSVQSLQLQQTQQVNTQQPQQLQVQAIQIHPQHQPIQIHAVGVQQVQQQQLHVATSTCQTMLPNILQLQPGTVAVSGLGAGELGGVTHRIILQPQPQPTHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094252;
- 90% Identity
- iTF_00637960; iTF_00909068;
- 80% Identity
- -