Pmus008414.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829105.1:14994762-14995595[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-07 0.00012 22.3 0.2 4 35 15 46 12 56 0.87
Sequence Information
- Coding Sequence
- atgccTCCAATAAAGGGCAAAATGTTTAATTACTCAGAATATAATATGATGAAAGCGTATAATGAAGTAAAATCCGGGATTTCCATAGCTGCTGcgtctaaaaaatataaaattccttATAGCACACTGTCATATAAAGCTCATGAACCTAGAgcagctgttacaaatgagGCATTAAGCAAATGGTTTGCGGAAATTTGCGAGTTCTTTGCAGATAAAAATTTAGACGCAGTCATCCGTAACCCAAAGCGGGTTTTTAATTGTGACGAAACCGCTCTTTTTCTTAACCCTAAGGGTAATAAAGTCTTAGCTGCAAAAGGCAATAAAACAGTCTATCAGAAAGTAAATGCTGATGAAAAGGAATGTCTTACAGTTCTTCTGACGGGAAATGCAGCGGGGGATCTACCACCTTCTATGATTGTATATCAGTACACGAGAATTCCTAGAGATTTAGCCCTTAGCGTAGCAAAAAATTGGGGTATTGGCCGTTCAGAAAACGGCTGGATGACGGGCGAAACATTTTTTGAGTTCATAGCAAACATTTTCAATCCATGGCTTAACGAGAACTAA
- Protein Sequence
- MPPIKGKMFNYSEYNMMKAYNEVKSGISIAAASKKYKIPYSTLSYKAHEPRAAVTNEALSKWFAEICEFFADKNLDAVIRNPKRVFNCDETALFLNPKGNKVLAAKGNKTVYQKVNADEKECLTVLLTGNAAGDLPPSMIVYQYTRIPRDLALSVAKNWGIGRSENGWMTGETFFEFIANIFNPWLNEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01166642; iTF_01166643; iTF_01166644;
- 90% Identity
- iTF_01166642; iTF_01166643; iTF_01166644;
- 80% Identity
- iTF_01166642;