Pmus019111.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829118.1:2674269-2676065[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-07 5.5e-05 23.4 0.0 1 39 15 54 15 57 0.93 2 2 2.5 5.1e+02 1.1 0.0 18 30 362 374 358 384 0.83
Sequence Information
- Coding Sequence
- ATGCCGCGAAATTATGTAAGAACATCGAACCGTCAAACGTGGAGCGAAGAACAAATGAAAAATGCTATTATGGAAGTCATAGAAGGTAGAAGTGGATACCGTCTCGCTTCTCGGACGTTTTCGGTGCCACAGTCGACGCTAGAAGATAGAGTAAAAAAGTACAGAATTAATAACGATATCACAGCTGCCTCAAAAAAAGGATTAGGTCGTTTTAAGACCATTTTTACGGATGAGCAAGAGAATTCTATGTGCCAACACATTAAAGACCTTGAAGCTCAATTATTTGGACTAACATATAGGGATTTTCGATATCTAGCTTTTCAAATGGCAGAAAAAAATGGTATAGATCATAACTTTAACAAAAACACCGAATTAGCTGGAATGGATTGGCTCTATGGGTTTCTACGTCGCCATCCAGAATTATCACTGCGGCTGCCAGAGCCAACGTCCGTGGCACGTGCAATGGGATTCAATAGAGTCAATGTCGCTAAATTTTTCTCTCTATTGGTTGAATTGCAAACTAAACACCAATTTGAGGCAACCAAGATATTTAATGTAGATGAGACTGGGATCACTACGGTCCCCAAAAAGAAATCTAAAGTTCTTTCATTGAAAGGGAAAAAACAAGTGGGCATTATCTCTTCTGCTGAAAGGGGCCAGTTGACTACTGCTGTTTTATGTGTATCAGCAGCAGGTCATTACGTACCACCACTTTTGATATTTCCAAGAGTCCGAATGAAAGCTGAATTATTAGACGGGGCGCCACCTGGAACCATTGCAATGTGCCATCCCAGTGGGTGGATTCAAAGTGAAATATTCGTTCATTGGTTGGAACATTTCATCTCAAATGTTAAACCTACAAGAGAAAATCCCGTGCTGCTTCTATTAGACGGTCACTCGACCCATACCAAGAATCTTCAACTGATAGAAAAAGCACGTGAAAATGGTGTCATCATCGTCAGTTTCCCTCCCCATTGCACACATCGCCTTCAACCACTTGACGTTAGCATCATGGGACCAATCAGCACGTTTTATAGTCAAGAAGTGATGACATGGTTGCGTAATAATCCAGGACGTGTAGTTACCCAATTTCAACTTGCCAAATTATTTGGTATTGCATATGCTAAAGCAGCAACACTTCAGAATGCTATAAGTGCATTCACAAAAACAGGCATTTGTCCGTTGAATCCTAATATCTTCTCTGATCATGATTTTATATCTTCTACTACAACGGACAATGAAATCCCAGCCTCTGAACCTACTCCAAGCACATCTGAATCCGTTACAGCTGTGATTAGAGACAAAAATACTGTTAATAACACGATTGTTGACAAGAATGTGCCTGTGCACAACGCAAAAGTGATAAACTCGCATTCATCCTCTGCCGAGCAACTAGGAGTTAGCCCACGTCCAAACATTGCATTGCCATCAGCATCAACTTCTGCAGCAGTTTCGCCGGCTGATATTTTACCAAAACCTCATGTCGTCAgaaaaatcaattcaaattcTCGAAGAGGCAAAACTGCTATAATTACATCATCACCCTATAAAGCAGAATTAGAAGAGAGCGCCAAAAAGACAAACAAGAAGAAAGTTCCTAAACTAGATGCTAAAATTGCAAAtcctaaaaagaaaaagttttcaGATAATATGTGTGTGTACTGTTCGGAAATCTATGGAAATACACGAAGGAGTGATGATTGGGTGCAATGTTTAAAGTGTAAGAAATGGGCTCATGTGGGTTGCACAGGTTGGGAAGAAGAAGAACTTGATGATTTCCTTTGCTTCCGTTGTTAA
- Protein Sequence
- MPRNYVRTSNRQTWSEEQMKNAIMEVIEGRSGYRLASRTFSVPQSTLEDRVKKYRINNDITAASKKGLGRFKTIFTDEQENSMCQHIKDLEAQLFGLTYRDFRYLAFQMAEKNGIDHNFNKNTELAGMDWLYGFLRRHPELSLRLPEPTSVARAMGFNRVNVAKFFSLLVELQTKHQFEATKIFNVDETGITTVPKKKSKVLSLKGKKQVGIISSAERGQLTTAVLCVSAAGHYVPPLLIFPRVRMKAELLDGAPPGTIAMCHPSGWIQSEIFVHWLEHFISNVKPTRENPVLLLLDGHSTHTKNLQLIEKARENGVIIVSFPPHCTHRLQPLDVSIMGPISTFYSQEVMTWLRNNPGRVVTQFQLAKLFGIAYAKAATLQNAISAFTKTGICPLNPNIFSDHDFISSTTTDNEIPASEPTPSTSESVTAVIRDKNTVNNTIVDKNVPVHNAKVINSHSSSAEQLGVSPRPNIALPSASTSAAVSPADILPKPHVVRKINSNSRRGKTAIITSSPYKAELEESAKKTNKKKVPKLDAKIANPKKKKFSDNMCVYCSEIYGNTRRSDDWVQCLKCKKWAHVGCTGWEEEELDDFLCFRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01166604;
- 90% Identity
- iTF_01166604;
- 80% Identity
- iTF_01166605;