Pmus014321.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829112.1:9940656-9941018[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-09 3.9e-07 30.3 0.3 15 40 27 52 20 57 0.87 2 2 4.3 8.7e+02 0.4 0.0 29 40 54 65 52 72 0.79
Sequence Information
- Coding Sequence
- ATGGGTCAGCGGTACAAGAGGAAAACACAACAAGCCTCATGGGATGTTTCATCaataaaaactgccatggaaGAGGCGAAAAAAACATCTGTTAGGAGAGCAGCTATAAAATATGGCATAAATTTGTCGACGCTACAAAGACATATAAAAAAAGGCTCACCGAAAAACACTCTCGAAAAGATccaagaaagaagaagaagaaagaaagaagccAGCAAACGATCAATGGCGTCAATTTctggtaaaaataataaagtgtcAACCCGCAAGAAGAAATTGAATGGAAATAAATCAGCTGATGATGTTATATGTGTTTTTTTGCCACGGACGGTAACACAGAGCCTCCAAATGAAGACTGGATAA
- Protein Sequence
- MGQRYKRKTQQASWDVSSIKTAMEEAKKTSVRRAAIKYGINLSTLQRHIKKGSPKNTLEKIQERRRRKKEASKRSMASISGKNNKVSTRKKKLNGNKSADDVICVFLPRTVTQSLQMKTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -