Pmus006611.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829103.1:13915951-13917888[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-10 4.5e-08 33.3 0.0 2 38 16 52 15 58 0.91
Sequence Information
- Coding Sequence
- atggTTAACAACTATAAAAGGAAGTCGGTCAGGCAATCCTGGCGTGAGGAGGACAtgaaaaatgccattgaaaaaGTAGCTACGCGCAAAATGGGGCTTAACAAAGCGGCCGCCACATTTAATGTTCCAAAGACTACATTAATAAGAAGACTTACCAAATATGAGAGCACCAAAGACTTAACTGTAGCTACGGAAAAGAAAATGGGCAGGTATGAAAAGGTGTTTAATGTCGATCAAGAGAGAGAACTAGCATCCTATGTCAAAAATATGGAAAATCGCTTTTTTGGTTTAACCACAAAGGATCTCAGGCGTCTCGCATATGAGCTAgccgaaaaaaataaattgcaacACAGTTTCTGTCACGAGACGAAAATGGCGGGAAGAATATGGCTCGAAAATTTCTTAAAGCGTAATACGGACTTAAGTCTGCGAAAACCCGAACCGACTTCAGCAGCTCGAGCGTCTGGCTTCAACCAAGTTCAAGTTAAACGATTTTTCGATTTGTTGACAGACATTACAACAAAGTATAAATTGACACCCGATCGAATATTTAATGTCGATGAAACGGGCATGACAACTGTTCCAAAAAGTATGCCTCGGATTGTTGGTACAAAAGGAAAGAAACAGGTGGGGTTATTAACATCTGCTGAGCGCGGCCAGCTTGTCACTGTTGTTTGCTGCTTTGGTGCGGACGGGTCTTACATGCCTCCCTTATTCGTGTTCCCTCGTAAAAGGATGAAACCCGAATTGATGCTAAATGCTCCACGAGGATCTTCGGCGTTTTGTCATGAAAGCGGGTGGATTCAAAAAGATATTTTCACAGAGTGGTTCAAGAAGTTCATCAAATTTTCAAGAGCGTCAGTCGATAATCCAGTCTTGCTTTTGCTTGATGGGCATGCCAGCCACATGAAAAATATGGAAGTTATCGATTTAGGACGGGTCAACGGCGTGCATGTGCTTTCATTTCCGCCTCACTGCACACATAAGCTTCAACCCTTAGATGTGGGATTTATGAAACCTTTTTCGACTTATTATACAGAAGCCGCAAATACCTGGCTGAGATTAAATGCGGGTAAAGTAATAACCCAGTTCCAAATTGCAGAGCTTGTCGACAAAGCCTTCCAAAAAGCTGCAACGTTATCAACTGCTTATAACGCTTTTCGAGCCACCGGCATCTGGCCGTTAAACCCTGACGTATTCACAGAGGCAGACTTTTTAGCAGCAGCGACCACTGACATTGAGATGCCAGAAGCAGCGCCAAGGGATAATGAACCTGAACCAATAGTGATTCAACCCGAAGAAACGCCCCTCATCGATGAACTTGGATTGTCAGTTTCTGACGATCATGCAACTATTGAATTAAATAGGACACCGCCTCTCGTCAACGATGAGATAATTATAGCGGAAGCTGGCATGTCTAGCAATGAAGGCATCAATGAACTATCTAGAAATGATGAACCCCAGCCATCTACGAGTACATCATTTTCTATTGCTCCAAAGGATATTATGCCCATACCTAGAACTTCTAAACGGACTAGAATTAATATTAAGCGTGGAAAGACAGTGGAAATAACATCCTCACCTTATCGCGAAGAATTAGAAGCCACTAAAAAAGCAcaggaaatgaaagaaaatgcaAAGAAGGTAAAACAGAATCTTTTCAATGATAAGAAGGGAAAAGGGAAACAAACAAACGTACAAAAAGGAAAAGGAAAGGGAAAATCTACAAAGAAGagtacaaaaaacaaaaacacatactCATCAAGCGAAGATGAAGAAGACGTACGATGTTTCTATtgcaatcatttattttctgaaTCGACAGAGGGCTGGGTTCAGTGCCCCGCATGTTCTTTATGGGCACACTGTAGTTGTGCCGGTgtcgaagatgatgatgaagatgttAGATTTGTTTGCGAAAGGTGTGCCGTTGACTAG
- Protein Sequence
- MVNNYKRKSVRQSWREEDMKNAIEKVATRKMGLNKAAATFNVPKTTLIRRLTKYESTKDLTVATEKKMGRYEKVFNVDQERELASYVKNMENRFFGLTTKDLRRLAYELAEKNKLQHSFCHETKMAGRIWLENFLKRNTDLSLRKPEPTSAARASGFNQVQVKRFFDLLTDITTKYKLTPDRIFNVDETGMTTVPKSMPRIVGTKGKKQVGLLTSAERGQLVTVVCCFGADGSYMPPLFVFPRKRMKPELMLNAPRGSSAFCHESGWIQKDIFTEWFKKFIKFSRASVDNPVLLLLDGHASHMKNMEVIDLGRVNGVHVLSFPPHCTHKLQPLDVGFMKPFSTYYTEAANTWLRLNAGKVITQFQIAELVDKAFQKAATLSTAYNAFRATGIWPLNPDVFTEADFLAAATTDIEMPEAAPRDNEPEPIVIQPEETPLIDELGLSVSDDHATIELNRTPPLVNDEIIIAEAGMSSNEGINELSRNDEPQPSTSTSFSIAPKDIMPIPRTSKRTRINIKRGKTVEITSSPYREELEATKKAQEMKENAKKVKQNLFNDKKGKGKQTNVQKGKGKGKSTKKSTKNKNTYSSSEDEEDVRCFYCNHLFSESTEGWVQCPACSLWAHCSCAGVEDDDEDVRFVCERCAVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072410;
- 90% Identity
- iTF_01166565; iTF_01166567; iTF_01166568; iTF_01230472; iTF_00761577; iTF_01166569; iTF_01166636; iTF_00751983; iTF_00751984; iTF_00751988; iTF_00751989; iTF_01083258; iTF_01030139; iTF_01083259; iTF_01083260; iTF_00850621; iTF_01166560; iTF_00850582; iTF_00850583;
- 80% Identity
- -