Pmus023567.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829124.1:8033333-8034169[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-10 3.2e-08 33.8 0.0 2 40 15 53 14 57 0.92
Sequence Information
- Coding Sequence
- ATGTCTacgaaaaaacaaataaaaaaaactgtaacttACACTGCTGAAACTCTACAGAAGGCATTAAAAGAAATTCGTGAATCCCAAATCTCAATCAGGGAAGCATCGCGTAAGTTTAATATTCCGAGATGCACGATTCAAGATCGATTAAGTGGCAGAAGGACGGACGAACTAAAAAAACATGGCCCCGAGCCAGTGCTGGGAGAACaaggcgaaaaaaaaattgtagattGGCTTATAAACATAGCCAAATGTGGCTTTCCAGTAAAGAAGCAAGAGCTATTAGATACAGTCCAAAAAattttcaaagatttaaaaaagCCGAATCCTTTTAAGGATGATCGTCCAGGACAGACATggtatataaactttttaaaacgaCATCCTGAGATATCTGTGAGATCAGCAGAAGGAATCAACAAAGCTCGCGCAAGGGTGACCGAAGAATCAATTCGACTGTGGTTCCGCGAACTGGAAATGTTTTTAGCGCAAGAGGGGCACTTAGATATACTTGCAGAACCCGAAAGGATGTTCAATGGCGATGAAAGTGGTTTTTCACTTTGCCCAAAAACTGGAAAAGTTCTTGGGCCAAAAGGTTATAGAAATCTCTACCAAATTAAAGCCGGTAACGAAAAAGATAACCTAACTGTACTCACAACATTCAACGCTACTGGTGTAATGTGCCCACCATTGGTGGTTTTTCCATATATTAGACCACCAAAAAGTTTAACAGACAACATGCCACAACACTGGAGTCTGGGAAGAAGCGAATCCGGATGGATGAATGGAGATGTATTCTTCGAATATATCACTAATGATGTTGAGCTCTGTCTGTGA
- Protein Sequence
- MSTKKQIKKTVTYTAETLQKALKEIRESQISIREASRKFNIPRCTIQDRLSGRRTDELKKHGPEPVLGEQGEKKIVDWLINIAKCGFPVKKQELLDTVQKIFKDLKKPNPFKDDRPGQTWYINFLKRHPEISVRSAEGINKARARVTEESIRLWFRELEMFLAQEGHLDILAEPERMFNGDESGFSLCPKTGKVLGPKGYRNLYQIKAGNEKDNLTVLTTFNATGVMCPPLVVFPYIRPPKSLTDNMPQHWSLGRSESGWMNGDVFFEYITNDVELCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208096;
- 90% Identity
- iTF_00039736;
- 80% Identity
- -