Pmus007002.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829104.1:4049252-4049973[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-11 9.5e-09 35.5 0.0 3 36 12 46 10 49 0.92
Sequence Information
- Coding Sequence
- ATGGAAAAAATCAAGAAAGGTCTTTGGCAATCAGAAAACTTAAAGATCGCCATTGAAAAAGTAAGCTCAAAAAAAATTTCTCTTAGAGAAGCAGCTTCAAGATATGGCATTCCTACTAAAACTTTGTACGATAAGTTGAAACTGATTAAAGACGGTAAGGAGGTggagataataattataattatcgaAGAGCAACGTAGCGGTGATCATTTTCCACCCGATGTTCCTCAAATAATACCGGAGCAAACACCTACAGCCAGCATTTTACCGCAAAGCTTTTCACCGCAGCCTTCTACGAGCAAAGGTCCAGATTTTGTAAGACAATCCATTTTAAACATCTCACCGTTGCCAGACGCTGCAAAGAAAAGAGCTCAAACAAGGAAACGAAAGTCTGAGAAAAGTCAAATTCTAACTTCTTCTCCATACAAATTGTTTTTGGAAGATAAAAAAATGAGAAAACGCTTAAGGAGGAGAAGAAACAACTACCAAACCAAGGACACTACGTGTGTGGTTTGTCTAGAAGATCACGATGAAGACTGGATTCAGTGCAATTCATGCAAAGAATGGGCACACGAGGCATGTGCTGATATACCAGAGTGCTCAGAATTATATATTTGCGATCGATGTCATCTTTTTTAG
- Protein Sequence
- MEKIKKGLWQSENLKIAIEKVSSKKISLREAASRYGIPTKTLYDKLKLIKDGKEVEIIIIIIEEQRSGDHFPPDVPQIIPEQTPTASILPQSFSPQPSTSKGPDFVRQSILNISPLPDAAKKRAQTRKRKSEKSQILTSSPYKLFLEDKKMRKRLRRRRNNYQTKDTTCVVCLEDHDEDWIQCNSCKEWAHEACADIPECSELYICDRCHLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01166598;
- 90% Identity
- -
- 80% Identity
- -