Pmus010610.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829108.1:4044501-4066741[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.4e-09 1.5e-06 28.4 0.0 3 38 224 258 222 263 0.90 2 3 9.1e-08 1.8e-05 24.9 0.0 4 38 320 353 318 358 0.91 3 3 4.7e-09 9.5e-07 29.1 0.0 4 39 416 450 415 455 0.94
Sequence Information
- Coding Sequence
- ATGATACCGTCTGGATATAAGCAATGGCTGTTGATGCTGAACGGTTACACCTTCTCAAAGATGGCTAGTGATCGGCGCTGGTACTGCCCTAAAAGAGTAAATGGGTGCAGAGCCAAGGTGTTCCTAGGCGCCAACGATGAAATCAGAAAGTCAAATACCGACCACAACCATGCTCCTCCCCAATACCATGGGGTCTCAAAGCGCTACTGGTACTGCTCTAAGAAGAACAGTGGATGTAAAGCCAAGATCAATATGGATGTTGACGAGAGCACCATATTAGTAGCCCATAATGTGCACGAACACGACCCTCCGTCTTACTTTGTGACGGATAATGGGCAATATATTCTTAAAACTACTAGAGATTGTATTTTTATTCCAACTGGTCAAAAGAAATCGTTGCTGATGATTGGAGGATACACCTTCGCCCAAGTTCATCCTCGCCACTACTACTGCTCTAAGAAGAAGCACGGATTTGCCTGTGACGATATCGGTGCCTATGAACGTGGGATCGTCAAAGTGTTGTACAAAGGTTACACTTACTCCAGAGTTAACAACAGGGCACTTATGTTGAGGTGCGCGTGTCGCTTCAAGAGCAAGTGTGAAGCGAGAATCAGATTCACTTACGATTGGAAGTTGAAGATTATAATTGTGCGCAAAAATTACAATGAGAAGCAATTACAGCAGGCAGTAGATGCGGTGACCAATGGGATGAGTTTGAATGCAGCATCAATAAAATACCAAGTACCTAGAACAACAGTGGTTTACAGAATGAGTGGCCTCATAGGTCGACGCACTCGAATGTCCACTAACCAAGAAACGGAATTAGTCAACTGGATTAAAATGTACAACGGTGGTTGTCTATGGAGCAAAACGGAATTGAGAGCTTTCGTTGAACAgtatttaaaagataaaaatatggAGCATCTATTCAAAGATGCGCGCCATAATTATGAAATGCAAATACAAAAGGCAATCGATGCAGTCAATAATGGGATGAGTTTGAATGGAGCAGCTGTTAAATACAAAGTACCCAGAGCAACAGTGGTTTACAGAATGAGTGGCCTTGTTGGTCGACGCACTCGGATGTCTTCTGACGAAGAAACGGAACTAGTCAACTGGATTAAAATGTACAACGGCGGTTGCATATGGACTAAAACGGACTTAAAAGCTTTCGTTGaacaatatttaaaagataaaaacatCGAACATCTGTTCAAGGATGGGCGCCGAAAATACGATGTAAGCCAAATACAAAAAGCAATTGATGCAGTAAACAATGGGATGAGTCTAAATGCAGCAGCTATAAAGTTCAAAGTCCCCAGAAAAACTATAGTGTACAGAATGAGAGGACTTGTGGGTCGACGCACTCGGCTGTCTAATGATGAAGAGGCTGAATTAGTCAACTGGATTAAATTGTACAACGGTGGTTGCATATGGACTAAAACGGACTTAAAAGCTTTCGTTGAACAgtatttaaaagataaaaacatCGAACATCTGTTCAAGGATGaAGAAGGCCCACAATTCCTGAGTTACTATAGACAGTACAGGAGTATGAAACCTAACCGCTTCTTGCAGAATGACAACAATGACAAGGCAAGAGACGCCAGAAACGCCGCTGGAAGGAAGTCCTCAACTGCTTACAGACTCCGCGTGGCAAAGTTTATATGTTCAGAAAGTTTAGTTATACATACCGAGGTCAAAGTGTTCTCTACTGCTCAAGAAAGTTTCGAGGGAAATGTAGAGCACAGGTGA
- Protein Sequence
- MIPSGYKQWLLMLNGYTFSKMASDRRWYCPKRVNGCRAKVFLGANDEIRKSNTDHNHAPPQYHGVSKRYWYCSKKNSGCKAKINMDVDESTILVAHNVHEHDPPSYFVTDNGQYILKTTRDCIFIPTGQKKSLLMIGGYTFAQVHPRHYYCSKKKHGFACDDIGAYERGIVKVLYKGYTYSRVNNRALMLRCACRFKSKCEARIRFTYDWKLKIIIVRKNYNEKQLQQAVDAVTNGMSLNAASIKYQVPRTTVVYRMSGLIGRRTRMSTNQETELVNWIKMYNGGCLWSKTELRAFVEQYLKDKNMEHLFKDARHNYEMQIQKAIDAVNNGMSLNGAAVKYKVPRATVVYRMSGLVGRRTRMSSDEETELVNWIKMYNGGCIWTKTDLKAFVEQYLKDKNIEHLFKDGRRKYDVSQIQKAIDAVNNGMSLNAAAIKFKVPRKTIVYRMRGLVGRRTRLSNDEEAELVNWIKLYNGGCIWTKTDLKAFVEQYLKDKNIEHLFKDEEGPQFLSYYRQYRSMKPNRFLQNDNNDKARDARNAAGRKSSTAYRLRVAKFICSESLVIHTEVKVFSTAQESFEGNVEHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -