Pinf038540.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992540.1:120387185-120399856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00097 0.083 14.7 2.8 2 22 182 202 181 204 0.88 2 13 0.27 23 7.0 5.3 1 20 237 256 237 257 0.95 3 13 7.5e-05 0.0064 18.2 3.9 1 23 273 296 273 296 0.98 4 13 0.072 6.2 8.8 0.4 2 20 413 431 412 435 0.88 5 13 0.026 2.2 10.2 5.4 1 23 468 491 468 491 0.95 6 13 0.92 78 5.4 1.7 1 23 516 539 516 539 0.92 7 13 0.18 15 7.6 0.7 2 23 625 647 624 647 0.92 8 13 0.0005 0.042 15.6 6.6 1 23 680 703 680 703 0.97 9 13 1.6 1.3e+02 4.6 0.8 2 23 802 824 801 824 0.92 10 13 0.0032 0.27 13.1 1.7 1 22 858 879 858 882 0.90 11 13 1.1 93 5.1 1.5 2 23 980 1001 979 1002 0.93 12 13 0.0056 0.48 12.3 1.1 1 20 1035 1054 1035 1056 0.95 13 13 0.02 1.7 10.6 4.7 2 23 1098 1120 1097 1120 0.95
Sequence Information
- Coding Sequence
- atgcctttaaataGTTTATGTCGTCTGTGTATAACTTCTTGTGATAGATTTAAAAGTTTAATTGATGATAATGGCCaattaaatggaaatttttcaatTGCAGTAAAATATTTTGATGCAATGttattgaATCCTGCAGACGAGCACATTTCATCGGTTATATGCATAAAATGTTGGCAATATATAAAAGATTTCCATACATTTCAACAATATGTAATAAGTTGGCAAAATCATTTGAAATATGTAAAACCAATCGTACTGATTACCAAACTAGAAGATCAAGAATCGGATGAAAATAAAGTTATAAAGAAACAAAATGATGTAATTGATGCAAATAATGGTAAACCTGCAATTGGATCATACAACGATACTGCTTCGGAGGATGATTTAATGCTGCCTGTCTTAAATGCAACAAGTAATGAAAATATAGAAAGTGAATTAgggtttttcgattttgatactATTTTTTCTGACTACGAAACTCTACCCAACCTACCCAATTTACAATATGACGAATATATAGCTAAATACAAAAAGAAACTAGAATGCCCCAagtgtaaaaaatgttttaataattaCGACTTGTTAAAACAGCATTTTGATCTCGATCATCCAAATGAAAATTGTCATATACTTTGCTGCAATACTATATTAAATTCTCGTTTTTACATAGTAGAACACATGGAATATCATAGAAATCCAAAAGCCTATCAATGTACTAAATGTAAGAAATGTTATAATGTTATAGGGTCTTTAAGATCTCATAAATGCCCTGGTCCCTCTAAAACTAAAAGAAAGCTCCAAAAGGAAACGAAATATAGGTGTGATCATTGTAAACGATCTTTTGAAAAATATGTACTATTGAAAAAACATCAGAGAATTGAACATAATGATGATAAACATTTAAAGAAACTGAAACTTCAAAAaagtattaaacaaaaaaatcataaaaactataaaatgttGTCTAATAATAATGATGAAAGCACTCAAATAAACTTGGATGTATGTGAAAGAGAAAAAACTGAAAATACAACGGCAACTTCCAGCAATAATGATTTAGAAATACTATCAACTAATgaagaaattttatttgaatCAGATGATGATATTGATAATATTACAAATTCTGACAATGAATTTCATACATCAGACGATTTTAAATCTTCATCAAAAACTAATAAACGATTGCTTACGGAAAATAATGCTTATATAACAACACACAAAGGAGATTTGGAGTGTCCATTATGTAAATTAAATTTTGCTACTTTTAAATTACTACGAAATCATTTCGTATTGGAACATCCTAATGAAAAATGTCATATTCTTTGTTGTGGAACAAAGCtgtataaaacttttttaatattcaaaCATTTACGTTTTCATAGAAATCAAAAATCTTATCAGTgcattgaatgtaaaaaatgttatagTACACGAAGAAGTTTAAATAATCACCGTGATAAAAAACATAATGATAAGGATTTAACATCTATTGATTCTGATGGCAAAATAAATTTAACAACGTCGTCGTACAAAGGAATTTTTAAATGTCCTTTATGTAAAATTATTCTTACAAGTTACGAATTACTATACGAACATTTTTGTTTGACACATCCCCATGAAAAGGTGCATATACGTTGTTGCAATATTAAATTAAATACCGGTCCGGAAATTGTCCAACATTCATCTTGTAATAATATTAATGTACCATCTTTAGAAATCTATGATGTCAAAAATGAAGTTTCATTTGATTGGAATGACAACACTATGACAGATAATGAGCCAGGAGATAGCTTTAAAACTTTTACGAATATTTTTCCaggaaaacttaaaaataatgCTTCTATAAAGAAATACAAAGGCGATTTAGAatgtccattgtgtaaaaaaatcGTTGCAGATTTTCAACAGTTATCTAAACATTTCAAATTTAAACATCCTACACAAAAATGTCACGTTAAATGCTGCCAGactaaaataaaaaatcgcgCACTATTAGCACAACATATAAAACACCATCGACATCCAATATCTTTTCAATGCAAAGAATGTAATAAATGTTTTACTAACTTTCAGAAATTACAATCACATTTAAGTCGTAAACACAATATTATTCAACAATGTGCCAATAAATCTGCTAATTTAACATTGCAAAAAGAATTTGAAAAAGATAAACCTGAAAAAGAAACTTTATCTCCTGCTTCAGTTACTCAAAAGGATATTAAACAAACAACAAACCGTTTATCCAGTAATACTTTAAAGATTGGTAATgtcaagtataaaaaaaaatctcgtagttgtaaaaataatttgcaaGTTTCTCCAAAATCTGTCGGTTATCGTGAAgaacgtaaaaaaattttaaacgatgcATACATAGCAAAATATAAAGGAGATTTAGAATGTCCATTGTGCAAAGTTAAAGTTTCGAATTTTATTCTATTACATAAACATTTCAATTTGGAACATTTTAATGATATATGTCATATCGTATGTTGTAATACTATGCTAGGTAATCGATTTGATAttgtaaaacatataaaaaatgttCATAGAAACCCACAAAACTATCAATGTATTGAatgcaaaaaatcttttaaaagtaTACGAAACTTAAGGGAGCATCAACAAAATCTTAAACACGATATAAATGTACAAAATGAAActgagaaatataaaaaaaaattccaacaaaaaacatataatagaaatgatttaaaattaaggaaaactaaATCTACTGATGTTATACAAAATACTATAACAAACTTAAATAAAACATCTAATATTAGTGATAATGTCGTTTCCACAACTGGCGCTAACATTACAAAACTTGTCAAAAGTGAAACATTAAATATTGTTGAGAATGGCAATGCAGAGAAAAAAAAACCTTTAGACCATGATGCTACTATAAAAAAATGGTTAGGTAATTTAGAGTGTAATGAGTGTAAATTAATTTTTCCCAATTTTACTATATTGTCTAAACATTTTCGTGAGCATCATGTAGATAAACAGGTATATATAACTTGTTGCAAAGCTCGATATCGTAGACGTTGGGAAATAGTTCAGCATTTGCGACTTCATGCTGACCCTAGTGCCTATCAATgtaatgtatgtaaaaaaaatttgaaaaattttgatagttTAAAGAACCATAAACTTTTGACAACTTGCCAAAAAACATCAAATCCAAATGATAATAAAGAAGTGATATACATAAGAACCTTCAAAAATAATACTCATAGAAACAAACAAAATGACATTATAAAAAAATGGATAGGCGATTTACAGTGTCATGAGTGTAAATTAATGTTTTCCAACTTTCGTTTATTAAGTAAACATTTTCGTCAGAAGCATTTAGATAAAAAAGTATATATAATTTGTTGCAAACTTATATTACGTAGACGTTGTGATATAGTACAGCACCTGCGAACTCATGCTGACCCCAGTGCCTTTCAatGCTCTTTGCCTAATATTGCTTTTGATCAATCCGGTTATTCATCTGTGACGTCCACGAATGCATTGATTGCAGGTGCAGTTGTTCCATCTGAACGTGCAGTGGTGGTGCAGAATGATGTTTTGACCACAGGTCAAACTTCTGCGGATTCTGGCCAGGGTGTCCCACCGTCTGTGGATCAGCCGGGTAATTTTGAACAGCGATCTTTATTGTATTCTGATTGTCATTTTGGTGATTATTTGGATCTTTGTGCCACCTCCAAGTACAAGGGAGAAAGGGACAATTTGAGAAACTCCCTTTTCTTTTGGGATAcggttaagaaattttcttttaaggGAATTTTGCTTATTTCCCACATTGGGAAGACACTTCTAATGCCAACTTTTTTGCTACATATGAGCTCTCGGCATTGGGTTATAGACTTTTTATTTCGAATTCCTTTGTATACTCTTATGGAATGA
- Protein Sequence
- MPLNSLCRLCITSCDRFKSLIDDNGQLNGNFSIAVKYFDAMLLNPADEHISSVICIKCWQYIKDFHTFQQYVISWQNHLKYVKPIVLITKLEDQESDENKVIKKQNDVIDANNGKPAIGSYNDTASEDDLMLPVLNATSNENIESELGFFDFDTIFSDYETLPNLPNLQYDEYIAKYKKKLECPKCKKCFNNYDLLKQHFDLDHPNENCHILCCNTILNSRFYIVEHMEYHRNPKAYQCTKCKKCYNVIGSLRSHKCPGPSKTKRKLQKETKYRCDHCKRSFEKYVLLKKHQRIEHNDDKHLKKLKLQKSIKQKNHKNYKMLSNNNDESTQINLDVCEREKTENTTATSSNNDLEILSTNEEILFESDDDIDNITNSDNEFHTSDDFKSSSKTNKRLLTENNAYITTHKGDLECPLCKLNFATFKLLRNHFVLEHPNEKCHILCCGTKLYKTFLIFKHLRFHRNQKSYQCIECKKCYSTRRSLNNHRDKKHNDKDLTSIDSDGKINLTTSSYKGIFKCPLCKIILTSYELLYEHFCLTHPHEKVHIRCCNIKLNTGPEIVQHSSCNNINVPSLEIYDVKNEVSFDWNDNTMTDNEPGDSFKTFTNIFPGKLKNNASIKKYKGDLECPLCKKIVADFQQLSKHFKFKHPTQKCHVKCCQTKIKNRALLAQHIKHHRHPISFQCKECNKCFTNFQKLQSHLSRKHNIIQQCANKSANLTLQKEFEKDKPEKETLSPASVTQKDIKQTTNRLSSNTLKIGNVKYKKKSRSCKNNLQVSPKSVGYREERKKILNDAYIAKYKGDLECPLCKVKVSNFILLHKHFNLEHFNDICHIVCCNTMLGNRFDIVKHIKNVHRNPQNYQCIECKKSFKSIRNLREHQQNLKHDINVQNETEKYKKKFQQKTYNRNDLKLRKTKSTDVIQNTITNLNKTSNISDNVVSTTGANITKLVKSETLNIVENGNAEKKKPLDHDATIKKWLGNLECNECKLIFPNFTILSKHFREHHVDKQVYITCCKARYRRRWEIVQHLRLHADPSAYQCNVCKKNLKNFDSLKNHKLLTTCQKTSNPNDNKEVIYIRTFKNNTHRNKQNDIIKKWIGDLQCHECKLMFSNFRLLSKHFRQKHLDKKVYIICCKLILRRRCDIVQHLRTHADPSAFQCSLPNIAFDQSGYSSVTSTNALIAGAVVPSERAVVVQNDVLTTGQTSADSGQGVPPSVDQPGNFEQRSLLYSDCHFGDYLDLCATSKYKGERDNLRNSLFFWDTVKKFSFKGILLISHIGKTLLMPTFLLHMSSRHWVIDFLFRIPLYTLME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -