Pinf038985.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992540.1:137293218-137298999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8 1.5e+02 4.4 1.1 3 23 262 283 260 283 0.95 2 17 9.5 8.1e+02 2.2 1.6 6 23 293 310 293 310 0.95 3 17 0.00013 0.011 17.5 1.4 1 23 316 339 316 339 0.98 4 17 0.73 63 5.7 0.8 2 23 365 387 364 387 0.94 5 17 0.00059 0.051 15.4 1.9 1 23 619 642 619 642 0.94 6 17 0.016 1.3 10.9 0.6 2 23 682 704 681 704 0.94 7 17 1.4 1.2e+02 4.8 3.3 6 23 714 732 707 732 0.93 8 17 0.0064 0.55 12.1 5.8 2 23 742 764 741 764 0.94 9 17 0.03 2.5 10.0 1.4 1 23 774 797 774 797 0.96 10 17 0.00017 0.015 17.1 1.0 1 23 805 828 805 828 0.98 11 17 0.37 31 6.6 0.2 2 23 996 1018 995 1018 0.95 12 17 0.0039 0.34 12.8 3.4 1 23 1051 1074 1051 1074 0.97 13 17 0.034 2.9 9.8 2.4 1 23 1083 1106 1083 1106 0.96 14 17 0.082 7 8.7 0.2 2 23 1139 1161 1138 1161 0.94 15 17 0.00042 0.036 15.9 3.5 1 23 1194 1217 1194 1217 0.96 16 17 0.0052 0.44 12.4 3.3 1 23 1226 1249 1226 1249 0.96 17 17 2.1e-05 0.0018 20.0 1.5 1 23 1257 1280 1257 1280 0.97
Sequence Information
- Coding Sequence
- atgtcgcgCTCAACTTTATGTCGTTTATGTGTGACTTCTTGTAATGAATTTAAATGTTTATTGGATGACCACGGCCAATTAAATGGAGTTTATAAAGTGGCTGTTAAGTATTTTCACCCAAGTctATTAAATCCTGTAAGACAAGACACACCAAAGGTTATTTGTATAGAATGTTGGCAacatataaatgattttaataacTACCAAGAATCGGTAATAAATATACAATATCAATTAGAATATCTTCAACCAGTTGTGATTATTGACAAATCTAATCAAGATCATCCTAATAAACAACCTCAAGTTACGACTACCATCAAAACTGAGGCGGAAAATCCATTATATGTTTTCGATATATtacaatttaatgaaattaagcctGAACCCACACACGATGATGAATTTAttgacaaaattttaagcaattcTGAAGTAAAGAAAGAAAAGGACATTCAAGATAATCCACTCAAAAAACATCATATTGAAGAAACTGTTTCCAGGTCTTATTCTGATGCGGAAAATGACAATGATTCCGTTTTGTACGAGTCGTATTCTTCTAATATGCAAAATAACATGATAATCACATCtgaaatagaaaatgaaaatgaaacaatAGAAAAGTCATCACCATTTGAAATAAGAGTTGATCAGCCAGTTAACTCTAACATAGCAGATGAACCAACATATTCTTCTTACATGAAAAATACTACAAATTTCATGACAGATCAGCCATTCAAAAGCCATTATGATGAGTTTATACGAAAAGTAAAAGGTGATTTAGACTGTCCTAAATGTCAAGATAAATTAACTGATTTTAAAGCACTACGTCAACATTTTCAAACTAAACACAATTCCGAAAAGCCCTATACcatatgttgtaatataaaaCTTATAACACGTACACATATTACTAGACATTTGCGACTACATATTAATCCAAATGCATATCAATGTAATAtatgtgaaaaaattttaaagaccaGTTGGAGTTTGAAATTACATAAAAGGACTAAGCATAGCAATAAATCATCATCATCACAAcaacaaattttggaaaaagaTGACTTTATAACAAAATGGTTAGGTAAATTGGAATGTGCCATATGTAAAAAACATATGGACAATTACAGTTTATTGGCCTGGCACTTTAAAGTTAAACATCGGTGTAAAGAATTTATAACATGTTGTGGTCGTAAATTGAGAATGAGATGGAGAATAGTTAAACATATACGTGAAATTCATATGAAAGGAGAAGTTGTTGAACAATTTTCAAAAGATCATGGTGAACTTCAAAAATATATTACACAAACAAACGATTTTACTGGAGAAATTGTTGAACAATTTTCAAATGAAGATGATAAATTACatataaatattaaatctgaacaCACGAAAGAACTATTAAACGATATAAATGAAGAAGACAGTTCTCAAACATTTAATGATTTAGCAAATGACGAAACTCATACATTAGCTACAGATCCGAACATGGAAATAGAAACATTTAAGAAAATGTCTGAAGatcaaattaataaaataaatcgaaggaTATCAAacgaaaataatattttaaatcaaGAACATATAATCGATACGGAATTGACTTCTTCTTCGGTGATGAATACAGAAGATTATGATATATctgataaaaactttaaaaatattttacgaacAATAATAGGCGATTTAGAATGTCCCATATGTAAAGTAATTGCAATAGATTTTCCGAGATTAAGTGAACATTTTCGTTATAAGCATTTTACAGAAACGCCCTTTATtatttgttgtaataaaaaaCTATATCATCATCAGATATCTCATCATCTAAGTCTTTTTCATGGCAATCAAATAAATTACCAATGTAATATATGTGAAAAGAATTTAACAAACAAATGgaatttaaaaatacataaacATAATGTACACGGTAGCGGAACCGTACTTTCTtcaaagtattataaaaaaacttcAGATGTTTCACATAGCGATAAGCAAAGAACTATGGACAATGATGCTACTATAGCACAGTGTTTGGGCGATTTGGAGTGTACAATATGTAAACGAAAATTTGCCACCTACACTTTATTGGGTATACACTTTCGACTTCAACATAGTGCACATGAGTGTCTTGTAGTTTGTTGTGGCAGAAAATTTCGTTTAAGATGGAAACTACTTAAACATGTTCGCCAAAAGCATATGGGGGTATTTGATCAAAAACTATGTAAATGTTCAATATGTTTCAAAACTTTTTCTCATGATTACAAATTACGTATACATATTCAACAAATGCATAAAACTATTTTCGACCAACATGACGATCATAAATGTAAAGTGTGCGAAGCATCATTTGGAAAGGAACAATATTTAATTGCGCACTATAGTCGATATCACAAAGAATACCCATTGCCTGGATATGAGTGTCAATAttgcaatttaatttttcaaacgcAAATCTCTTTGGAAAAACACATCAATAAAAAACATTCTCAACTGAATATTCAGAACAATGATTTAAGCAAAGACGATTGTAACCAAGAAACAATGAATGTACAAAAAGAAATTTCCAAAACTTTATTAGAAGATGAAatagattttcaagaaaataacatTAATAATGATGAAATGGATAAAGAAGTTATAACtgctataaataaaaaaacaggtaGAAATGATTTTTATGTAACTGTTTCTAAACACAACGATGAAATaccaaaaatatctttaaaaaaacagtCATTAATACTTGATATAGGAGAATCACAAGCCAAAGATATTTTAAATGCTAATTCTGATAAACATATTGAAATGCCTACATTAGATATTTACGATATAAAAGAGGAAATTTCCTGTGATTCTTCTATAAACTCTGCTGAAGACACGGACACCGAACAACAATTTGAATTACAACCATCATTGAAAAACTATGAAAGTAGACTAAAAACTAAGCGTTATgatgaatttataaaaaatattaaaggaGATTTGGAATGTCCGAAATGTAATATGTTGTTGGAAGACTTTGCATTGttaaataaacattttcaaaccGTACATGCTCCTGAAAAGGCCTATATTATATGTTGCAAACTTAAACATCCAAGTCGTATGCATATTGCTAGACACTTACGTCTCCATACAAATCCAAACGCCTATCAGTGTGATGTATGTAAAAGGAATTTTAAGAATTTGTGTAATTTAGGAGACCACAAAAAACGTGTACACAACAGCAAACGTTCTCAAAAGGAACACAAATGTGATATGTGTGAAGCATCATTTAAATTGGAACGGTATTTACGTGTACATTATTCTCGTAATCACGCAGAAGAATATCCTGCTTATCTAATGAGACTTGATTCAGTTAATGCTAAAACTCGGCTATATGATGATCATATAAAAAGAGTCAAAGGAGATTTAGAATGTCCCATATGTAATATGTCGCTAGGAAACTTTACATTGTTGCGTCAACATTTTCAAAGTGAGCATGATTCTAACAGACCCTATATAATATGTTGCAAACTTAAACATCCAAGTCGTATGCATATTTCTAGACACATACGCCTGCATACAAATCCAAACGCTTATCAGTGTAATGTAtgtgaaagaaattttaagacctTATTTAATTTAGAAAATCACAAGAAACATGTACATAAAAACAAAGACTCTCAGCATGAACATAAATGTGATGTATGTAAAGCATCATTTCGTAAAGAACGATACTTAAGGGCTCATTATAGTCGCAATCACAAAGAGTTTCCCTTACCTGATTATATGTGTCAACATTGCGACCTGATTTTTGCAACTCAAACTTCTTTggaaaaacacattaaaaaagaGCACACTAATATGGCCAAGGAGTCTATTGAGGGTCCATTTTCCAACAGTTAA
- Protein Sequence
- MSRSTLCRLCVTSCNEFKCLLDDHGQLNGVYKVAVKYFHPSLLNPVRQDTPKVICIECWQHINDFNNYQESVINIQYQLEYLQPVVIIDKSNQDHPNKQPQVTTTIKTEAENPLYVFDILQFNEIKPEPTHDDEFIDKILSNSEVKKEKDIQDNPLKKHHIEETVSRSYSDAENDNDSVLYESYSSNMQNNMIITSEIENENETIEKSSPFEIRVDQPVNSNIADEPTYSSYMKNTTNFMTDQPFKSHYDEFIRKVKGDLDCPKCQDKLTDFKALRQHFQTKHNSEKPYTICCNIKLITRTHITRHLRLHINPNAYQCNICEKILKTSWSLKLHKRTKHSNKSSSSQQQILEKDDFITKWLGKLECAICKKHMDNYSLLAWHFKVKHRCKEFITCCGRKLRMRWRIVKHIREIHMKGEVVEQFSKDHGELQKYITQTNDFTGEIVEQFSNEDDKLHINIKSEHTKELLNDINEEDSSQTFNDLANDETHTLATDPNMEIETFKKMSEDQINKINRRISNENNILNQEHIIDTELTSSSVMNTEDYDISDKNFKNILRTIIGDLECPICKVIAIDFPRLSEHFRYKHFTETPFIICCNKKLYHHQISHHLSLFHGNQINYQCNICEKNLTNKWNLKIHKHNVHGSGTVLSSKYYKKTSDVSHSDKQRTMDNDATIAQCLGDLECTICKRKFATYTLLGIHFRLQHSAHECLVVCCGRKFRLRWKLLKHVRQKHMGVFDQKLCKCSICFKTFSHDYKLRIHIQQMHKTIFDQHDDHKCKVCEASFGKEQYLIAHYSRYHKEYPLPGYECQYCNLIFQTQISLEKHINKKHSQLNIQNNDLSKDDCNQETMNVQKEISKTLLEDEIDFQENNINNDEMDKEVITAINKKTGRNDFYVTVSKHNDEIPKISLKKQSLILDIGESQAKDILNANSDKHIEMPTLDIYDIKEEISCDSSINSAEDTDTEQQFELQPSLKNYESRLKTKRYDEFIKNIKGDLECPKCNMLLEDFALLNKHFQTVHAPEKAYIICCKLKHPSRMHIARHLRLHTNPNAYQCDVCKRNFKNLCNLGDHKKRVHNSKRSQKEHKCDMCEASFKLERYLRVHYSRNHAEEYPAYLMRLDSVNAKTRLYDDHIKRVKGDLECPICNMSLGNFTLLRQHFQSEHDSNRPYIICCKLKHPSRMHISRHIRLHTNPNAYQCNVCERNFKTLFNLENHKKHVHKNKDSQHEHKCDVCKASFRKERYLRAHYSRNHKEFPLPDYMCQHCDLIFATQTSLEKHIKKEHTNMAKESIEGPFSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -