Pinf021537.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:32471085-32485731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.2 17 7.5 1.8 2 19 560 577 559 580 0.91 2 18 8.4 7.2e+02 2.3 1.0 5 23 596 615 589 615 0.85 3 18 0.0039 0.33 12.8 2.3 2 19 627 644 627 646 0.95 4 18 0.68 58 5.8 0.3 3 23 689 710 688 710 0.94 5 18 0.77 66 5.6 0.1 5 23 720 738 717 738 0.93 6 18 2.8e-06 0.00024 22.7 1.3 1 23 745 768 745 768 0.96 7 18 0.52 44 6.1 7.3 1 21 775 795 775 797 0.95 8 18 0.71 61 5.7 0.0 1 20 806 825 806 827 0.92 9 18 0.024 2.1 10.3 3.0 1 22 847 868 847 871 0.91 10 18 0.003 0.25 13.2 4.7 1 23 876 898 876 898 0.94 11 18 0.24 21 7.2 0.3 1 23 914 939 914 939 0.96 12 18 0.099 8.4 8.4 1.9 1 23 951 974 951 974 0.95 13 18 0.00058 0.05 15.4 0.6 3 23 981 1002 980 1002 0.97 14 18 0.014 1.2 11.1 1.3 3 23 1007 1028 1006 1028 0.91 15 18 0.018 1.5 10.7 1.8 1 23 1034 1057 1034 1057 0.95 16 18 0.0015 0.13 14.1 0.4 1 23 1062 1084 1062 1084 0.98 17 18 1e-05 0.00085 21.0 2.4 1 23 1090 1112 1090 1112 0.99 18 18 0.1 8.8 8.3 0.9 4 23 1120 1144 1117 1144 0.85
Sequence Information
- Coding Sequence
- atggcAGTTAATGTTTCTACAATTCTCAGTGTTTGTTTATATTGCAAAACAACAGATTCTGAAAAGGAATTTCATGAAGTTTTCGATGAAGTGGGAGTTGAATTGCAGTTACCCACTTTGGTggccaaattttttaagattaaagtAACAAATGAAGGCAAACAGTTACTTTGTGATGATTGTGTTAATCGTTTAATTGAACTTGTGGATTTGGATGAACATGCCAAAGGTGAAAAGGTTGTGGAAAAGGTTACTGCTGCAGATGATAACGCGGGAAAGGTAACAAATGTAATCGAAATAGTCGACAAGGATATTAAAACTGAAAAATCaaatgaaaataatgaaaatttatttgaaactgttaaaataattgaaaatagtTCTAATAATGATCagaaaattgatattttaaaagtccTTGAAGACATTCCCTATGAGcataatttagaaataaaaattccaaaaattgctAAGGAAATACAGTACAATAAAAATCGAAACGTAGAAACACCCACCGTTTGCCAAGATATTCAATTTATTGAAGATCAAGATATTGAAACAGCGGACAGTACCAGTGAAAATCATGAAAGCCAAATTTCCATTCCTGTGTATGATAGTTCTGAAGAAAACGTTAGTGAAGAAGTTGACGCAATaaattataatgaaaaaaatgtggATAATGATGATGCCAGTCAGTTTTCTTTAAACATAAAAGAGGATTCTCTAGAAAATGAGGATCAAGAAATTGAAATACCAAACGATTTTGAAGAAAAACCCTATGTTGATCAAAATAGTCCAGTTTCTGTACTCTTGGAAGAAGATTGTCAAGAAATTGAGGATCAATCATATAATAAtgacaacaaaacaaaaatttttatacaacatcaagaaatttttttaccaGAAAATATTGATTCAGATCAGTTTGAAAATGAGGATACTAAACAAAATGAAAACAGTATAGAAATTGAGTTATCAGAAGCTATTGAAGATCAGTATGAAATAGAAGAAAAGTATTCCATACATTTGGAAGCAGTTACACCTAAAAATGATCATCAATATGATAACGAGTTTTTCGAGGTACCTACTAATGATGCAAAGTCCAGTAATGATTTAAATGAAGCTATTGGACACTTAGAAGCAGTTACCAATAAAAATTATCCTCAACATGATAACGAATTTTTCGAGGAACGTTCTTATGATGCAAAATCCAATGATTTTTATGAGGATTCTGAGGATGATCCTATTGAAGAGTTAATAGAATCAACTGATGATCATGCGGAGGAAGATGTGAATTTTAAACAATTCAATTGTGTAACAGATAACAATGTTGAGGACGAATCTAATTGCTTTCAAGATAATAATGATAATATACTTAATATTGATGATTCTGTAGATTCAATTGATAACAATGTTAAGGAGGAGTCTAACTGCTTTCAAGATAATAATGATAATATACTAAATATTGATGATTCTGTAGATTTAATAATTGAAGAAACACAATTAAATCAGAAACCAAATGtggttaatgaaattttgaaagataATGAATTAACAGAAGAATATTTAATAGAAGaaatatctTGTTCTGATGGATCGGATTCAGTGAACCTAAATGAATATTTCGATAGTGCTCTGGTTACAAAGTTTGAGAATTTTAAACTGCCATGGTCACTACAATGTAAAttGTGTAATAAAACATACGTAAgctttcaaaaattattacaacaTTCCTGTATAGAAGATTTATTTGAAAAGCAAGAAGAATGTTGTTGTATTTTAAAAGACTGTGAAGAAAATGTAAATAGTACACAATCATTAGCTCGACATTTAATAATCAGTCATTACAATAAAGTAGATAGTCTTCCTATATATGGTAGATGTCCCGATTGCCAGAAAACCTTTTcaaatttaatagattttaatAAACATTCTTGCTGTCGTAACATAAAAAGAAAAACTGGCGCTAGAAACTATTGTCAAACTTgtgaaattgattttcaatctttaaaaagatTTGTCTTTCACATGCAGTTTCATTTGACTAAGCATCGACCGAAAATATGTTTATTATGTGGCGCTTTATTTAataattccaatgatttctttgAACATACACAATATAGTCATGAACCGGAAACTGCTTTGGCATGTATAGTatgtgATCGTTTTTTTAAAGAACAAGAAGTATATGAAAGTCATATGGAATTGCATGAAGATTCAAAATACACATTTGAATGTAGCTACTGTCCTAAAAAGTATACAACAAAGAAGAATTTAAATGTTCATATGgaTGTTTATCATAATCATAAATTCAATACTTTTCATTGTGAATATTGTGATAAACAATTATCAACGAGTGTGTCATATCATAATCATATGAAATGTCATATACTGGAAGAACAAGTAGAATCCTATGTATGTTCAAATTGTGGTTTAATATCGAATAACTACGATTTAATGAAGgaTCATGTAGAAATGGATACTAAATCACCTTGCTTTTCGGCAGAATTAACTCAAGAAGTTCTTAGGGCTGGCTATTCATGTGAAAATTGCTCAATAGATTTTAAATCACCAAAACATTTACATGAACATCGATTATCGTCGAATCATAGTAACATATTGTTTTTTTGTTCTATGTGTCGCAAATCTTTTAAGTCATTAAGACATCTGCGTAATCATGCTGTTAAACATAAAGAATATGAACAATGGCAATATATGTTTCCAATAGCAAGATATTATATGTGTAATATAGGGcaatgtcAAGAAGCCTATTCTCTATGGACTTCATTATATTATCACAAGAAAAGACCACATGAGGATGCTAACAGTATTGATTTAACTAAGGATTTTATATGTCAATTTTGTCAACAAAAATGTACATCTAAAATGTCATTAGCTGTCCATGTAGCTAGAAGTCATAATAATAGAAATATTCTTTGTTCTGTTTGCAAAAAAGCATATAAAGATGCAAAATCATTACAAGAGCATATGGATAAATTTCATACTAAAAAGGCATGTTCTTTATGTGCTAAAATGTTTAAAAGTCGTCGTAATTTAGAATCTCACGAACATTTGGTACATAAAAATGAAAAGCGTTACTTTTGTGGACATTGTAATAAGGGATATTTTTATAAAAGTGAAATGGAGGCACATGAAAAAAATGTACATCCTGAAGTATCCTACAAATGTGAAATTTGTAATTTCGTTACCAATTATCCCAAATCGCTAGAAATTCATTTGGATAAACATAACAATAAATTCGATTTTAAGTGCACAGTTTGTTCTAAATCATTTGGACGAAAACAACAATTAAATGTTCATTTGAAAAGGCATAAAAATAAAAAATACGTGTGTTGCGATTTTTATGAATCAGGTTGCAAACTTTCATTTATAGATTTAAATGTATTAAAGAAGCATATACTTAAACATAAAGATGGACCAAAAAAAGATACCGCTAAACGTAAGAGATCATCTCCAATACCAACTCAAGTTGAAAAAATAGAAGATTTAGCATCAATGATACTACTGGAGGACAATACAAATTGTAAACGTCGTAAAAAATCAACAGAAACAGCAATTTTAGATGTTAATGTGGTAGATTCAATAGAATTAATATTAGAAAATGAGATTCCGAAAGAAGATCTAAAAAGTGAAAATGAATTTATAATACAATATGAAGATGAACTCATTAATCCTAATTTAAATGTATTAAAGAAGCATATACTTAAACATAAAGATGGACCAAAAAAAGATACCGCTAAACGTAAGAGATCATCTTCAATACCAACTCAAGTTGAAAAAATAGAAGATTTAGCATCAATGACACTACTGGAGGACAATACAAATTCTAAACGTCGTAAAAAATCAACAGAAACAGCAATTTTAGATGTTAATGTGGTAGATTCAATAGAATTAATATTAGAAAATGAGATTCCGAAAGAAGATCTAAAAAGTGAAAATGAATTTATAATACAATATGAAGATGAACTCATTAATCCCAGTGagtaa
- Protein Sequence
- MAVNVSTILSVCLYCKTTDSEKEFHEVFDEVGVELQLPTLVAKFFKIKVTNEGKQLLCDDCVNRLIELVDLDEHAKGEKVVEKVTAADDNAGKVTNVIEIVDKDIKTEKSNENNENLFETVKIIENSSNNDQKIDILKVLEDIPYEHNLEIKIPKIAKEIQYNKNRNVETPTVCQDIQFIEDQDIETADSTSENHESQISIPVYDSSEENVSEEVDAINYNEKNVDNDDASQFSLNIKEDSLENEDQEIEIPNDFEEKPYVDQNSPVSVLLEEDCQEIEDQSYNNDNKTKIFIQHQEIFLPENIDSDQFENEDTKQNENSIEIELSEAIEDQYEIEEKYSIHLEAVTPKNDHQYDNEFFEVPTNDAKSSNDLNEAIGHLEAVTNKNYPQHDNEFFEERSYDAKSNDFYEDSEDDPIEELIESTDDHAEEDVNFKQFNCVTDNNVEDESNCFQDNNDNILNIDDSVDSIDNNVKEESNCFQDNNDNILNIDDSVDLIIEETQLNQKPNVVNEILKDNELTEEYLIEEISCSDGSDSVNLNEYFDSALVTKFENFKLPWSLQCKLCNKTYVSFQKLLQHSCIEDLFEKQEECCCILKDCEENVNSTQSLARHLIISHYNKVDSLPIYGRCPDCQKTFSNLIDFNKHSCCRNIKRKTGARNYCQTCEIDFQSLKRFVFHMQFHLTKHRPKICLLCGALFNNSNDFFEHTQYSHEPETALACIVCDRFFKEQEVYESHMELHEDSKYTFECSYCPKKYTTKKNLNVHMDVYHNHKFNTFHCEYCDKQLSTSVSYHNHMKCHILEEQVESYVCSNCGLISNNYDLMKDHVEMDTKSPCFSAELTQEVLRAGYSCENCSIDFKSPKHLHEHRLSSNHSNILFFCSMCRKSFKSLRHLRNHAVKHKEYEQWQYMFPIARYYMCNIGQCQEAYSLWTSLYYHKKRPHEDANSIDLTKDFICQFCQQKCTSKMSLAVHVARSHNNRNILCSVCKKAYKDAKSLQEHMDKFHTKKACSLCAKMFKSRRNLESHEHLVHKNEKRYFCGHCNKGYFYKSEMEAHEKNVHPEVSYKCEICNFVTNYPKSLEIHLDKHNNKFDFKCTVCSKSFGRKQQLNVHLKRHKNKKYVCCDFYESGCKLSFIDLNVLKKHILKHKDGPKKDTAKRKRSSPIPTQVEKIEDLASMILLEDNTNCKRRKKSTETAILDVNVVDSIELILENEIPKEDLKSENEFIIQYEDELINPNLNVLKKHILKHKDGPKKDTAKRKRSSSIPTQVEKIEDLASMTLLEDNTNSKRRKKSTETAILDVNVVDSIELILENEIPKEDLKSENEFIIQYEDELINPSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -