Pinf041985.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992540.1:215935246-215938890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.1 1.8e+02 4.2 0.7 2 23 32 54 31 54 0.90 2 9 1.6e-05 0.0014 20.3 0.7 2 23 189 211 188 211 0.96 3 9 0.00051 0.043 15.6 0.1 2 23 230 252 229 252 0.90 4 9 0.00016 0.014 17.1 2.2 1 19 255 273 255 275 0.96 5 9 1.9e-06 0.00016 23.3 1.9 1 23 283 307 283 307 0.96 6 9 0.051 4.3 9.3 3.6 1 23 313 337 313 337 0.93 7 9 0.009 0.77 11.7 2.8 2 23 344 365 343 365 0.96 8 9 8.1e-05 0.0069 18.1 0.1 3 23 373 393 371 393 0.95 9 9 0.00069 0.059 15.2 1.8 1 21 399 419 399 420 0.93
Sequence Information
- Coding Sequence
- atgttaaagttacTGCCAGCACCCAATTTTAATACTCAAGCAAAAACAAAATGTGGAGAAATATTTTGCCACAACACCACCGAATTTACAGTCTACTGTACATTCTGTGAAATGAAATCCTTTTCCTTCGATGATTTCTTAATCCATTTAAAAAACTTGCACTTTGCCAGCGATTTGCAAAAAACTGAAACTTATAATATTGCTAGAAATCCGTTTTATCAGGCTACTATTAAAGAACCAACAAATATTAAGGAGCCGACACACGTAGATGTGGGTGAACAATTACAAGAAGAGGACAAAATTTGGGATCAGTTAATACAATCgtacgatgatgatgatgttgtaaATAACGAAATCGACGATAGTGATGATTTTGGTGATGATGATTTATTTGAAAATGATAGTAACGATGAGGAACCATTAGCCATATTAAAGAAACCCAAGAAAAATGATAGACCCAAAAGAAAAACTACCAGCAAATGGATAAGGAATGACCAAAGTGATGATGAATTTATTGATTTCGATTCAGATGAAGAATATAAACCTACTCCAAACGAAAGCGTAGTATGTCATCAATGTGGTGAAACATTTAAGAATCTTGGACTTTTAAAAATACACACAAATCGTATACATGATGAAAAGTCTTCTGAatgttcagtgaaaaaagaaaaaaggagTAAGGATATTCCTTGCAATGAATGTGATCAAATATTTCCCAATAAAAAATCACTTTACAGTCATATTGTTGAAATCCATATGGGATTTAAATGTTCAACGTGTGATAAACGTTTTAAACAACGTCAACAGCTTGATAGACATGAATTTTGTCATACAGCCGAAAGAGTTTTTAGTTGCGACATAGAAGGATGCGACAAAAGTTTTACACACAAATATTATCTACAACGTCATATTGACAGCCATAATAAAGAGCGTAAATTTATATGTGATTTTGAAAATTGTGGTAAGGGATTCCATACGTTACGTTGCTTAAAAGCGCACAAAGGCAGACACACAAAACCGAAAAATCTTATTTGTGATTCATGTGGTTATACTTGTCGGGAACATGATAGATTACGGATACATCAACGTGTTCATACGGGTGAGAAACCGTATGGTTGTGATGAATGCGGTAAACGTTTTACAAGTAATGCCGCTTTGCTGGAGCATACAGTATCTCACACTGGTATCCGTTCTCATGTTTGTAGTAATTGTAATGCTTCATTTACCAGACAAAAATCGCTATATCAACACAGATTAAAATGTACTCCTTCAACATGA
- Protein Sequence
- MLKLLPAPNFNTQAKTKCGEIFCHNTTEFTVYCTFCEMKSFSFDDFLIHLKNLHFASDLQKTETYNIARNPFYQATIKEPTNIKEPTHVDVGEQLQEEDKIWDQLIQSYDDDDVVNNEIDDSDDFGDDDLFENDSNDEEPLAILKKPKKNDRPKRKTTSKWIRNDQSDDEFIDFDSDEEYKPTPNESVVCHQCGETFKNLGLLKIHTNRIHDEKSSECSVKKEKRSKDIPCNECDQIFPNKKSLYSHIVEIHMGFKCSTCDKRFKQRQQLDRHEFCHTAERVFSCDIEGCDKSFTHKYYLQRHIDSHNKERKFICDFENCGKGFHTLRCLKAHKGRHTKPKNLICDSCGYTCREHDRLRIHQRVHTGEKPYGCDECGKRFTSNAALLEHTVSHTGIRSHVCSNCNASFTRQKSLYQHRLKCTPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00893170;
- 90% Identity
- -
- 80% Identity
- -