Pinf041500.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992540.1:201193341-201197336[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.7 8.3e+02 2.1 1.5 1 23 256 278 256 278 0.91 2 14 1.3 1.1e+02 4.8 2.1 2 23 285 306 284 306 0.96 3 14 0.0088 0.75 11.7 3.6 1 23 312 334 312 334 0.97 4 14 1.6e-05 0.0013 20.4 6.1 1 23 340 362 340 362 0.98 5 14 0.0023 0.19 13.6 4.1 1 23 368 390 368 390 0.99 6 14 7.2e-05 0.0062 18.3 0.3 1 23 396 418 396 418 0.96 7 14 0.19 16 7.5 0.1 1 11 424 434 424 438 0.88 8 14 0.037 3.1 9.8 1.3 1 23 684 706 684 706 0.95 9 14 0.13 11 8.0 4.0 1 23 712 734 712 734 0.98 10 14 0.02 1.7 10.6 2.4 3 23 742 762 740 762 0.97 11 14 0.0001 0.0085 17.8 5.9 1 23 768 790 768 790 0.98 12 14 0.015 1.3 10.9 4.5 1 23 796 818 796 818 0.98 13 14 8.6e-05 0.0073 18.0 0.7 1 23 824 846 824 846 0.95 14 14 0.00013 0.011 17.5 1.3 1 23 852 874 852 874 0.96
Sequence Information
- Coding Sequence
- ATGTTTAAAACTATTATAATGAAAgaaataaaaactttatattCTTTTCAGATCATTAATGAAACTCCTAATAAACGTAAGACTCGGTTATCACCTGTTGTCGATAACTTCATGAAATCAAAAACAAATGTAGAAATTCTTATTGAACTCTATAAAAATCAACCAAGCCTTTGGAACAAAAATCTTTCGGATTATCGATTTAAAGAtaaaagacaaaaaattttccaGCAAATTACTCAAGATCTTAATAATAAACAAACATTAAATCTTACATGTGATGAGGTTGAAGAAATTACTGCATATATTTGTCGATACTACACTAGAAGGTGCTATGATTATATCAAGAAAAATGATGGAAAGATCAATAAACGTGCttggtattttgaaaatttgaaatttttaagacCCAAAACAATTATACAATTAGAAAAATTAGACCCACTACTGCCAGATTTGAAGGCAGAACAAATAATACAAATATTACAAATATATCGAGGATTTCCACATCTCTGGAATACCGACCTGATTGAATATATTTGCTCAAATAAACGTGATGATGCTCATAATGAAATGTTAAAAGCATTGGAAactaaaatgaatttaaaaatttctaatgaGGTTTTGGAAGAATATTTGCGTACCGTACACAgttatttttcaaaagaaaaacagCTTAGAACAAATAACTCTACTAATAATGAAACCGAGAAAAATATGTCGAATTATTATGAACAAATGCTTTTTTTATATGATCACGAAGGTCCATTTAGTTGTTCCGTATGCAGTCGCATTAAGGTAAAAGCATTTAATTTTAAAGTTCACAAATCTCAGCATGATGGTACAATCCCTCTTCAATGTTCCCTATGCCATAATAAGTTTAAAGGAATTCGTGCATATTTAAACCATGCCAAAAGACATTTGGAAGATTATGAATTCGACTGCAAGGATTGTGATAGGAAATTTTTGCATGAACGTGATTTAGAAATACATATGCATTCCCATACTGGTGCTCAACCGTTTACTTGCGAAATTTGTGGCAAATCATATCGTCATAgccaaacttttaaaaaacatcaaaagAAACATAAAGATACTTACTGTTATACATGTAATATTTGTAACAAAGGTTTTTACATAAAAAGATGTTATACTGATCACATGAATTCACATAATAATATACGTTCGTTTATTTGTAATCTGTGCGGCAAGGCATTTATTACCAGGAATGCCTTAAGAACACATTCAGTAACACACGATGATGAGCGTAAACATGCCTGTAATTTATGTGGCAAAACATTTAAGCTAAAAATTGGGATTATAAAGGAGACTGCTAAAAAACGTACAAAAAAGACATCACCACACGTTGATAATTTTATGAATTCAAAACCAAATGTTATAATTTTAATTGAAGCCTATAAAAATCAACCAAATCTGTGGAATAAAAAACTTCCCGATTATCGTTTTAGAAGCACAAGACAATTGATTTTTAAAGAAATCACCCAGGAtcttaataataaattaaatttaaacctTACCTGGAAAGAAGTGGCAGAAATTATGTCATATATTAAACGAAAACATCGAGATGATTGTAAAATTAATCATAAAGAAAAGCATAGAAAAGGAAAGAACTATACGCGGTCTTGGTATTTTGAAAGTTTGGAATTTTTAAGACCCAcacaaataatacaattagaaaaATTAGATTCACAACTAGAAGATTTAGTGCCAGAACAAATTACACAAATATTGCAAATATATCGAGAATTTCCACATATTTGGAATACAAATCTAATAGAATATATCTGTTCAAATAAACGTGAGGAGGCTCATAGTGAAATGTTAAAGACATTGGAAGTTAAAATGAATCTTAAAATAACTATACATGTATTGGAAGAATATCTGCGTACCATACATAATTATTTCTCTAAAGAAAAACAGCTTAGATTAAATAAGACACCACCTACAAGTGGGGACAGTGAAACCGTAAAACAAAAATCACCAGATTATTATGAACAAATGCAATTTTTGTATGATCACGAAGGACCCTTTAATTGTACCGACTGCAAACGTGTTTACCCAAAAGCATTAACATTTAAAGCTCATAAATCTCAACATGATAACTCAATGCCCTTTACATGTTCTCAATGTAATCTACAGTGTAAAACTATTTCCACATATACAATTCATGCTAAACGACATTTCGAAGATCTAAAATTCGGCTGTGATTTGTgtgataagaaatatttaaatCATAAAGATTTAAAAAACCATATGTTATCCCATTCGGGCGCCCAACCGTATTGTTGCGAAATTTGCGGTAAAAATTACCGGCATGCACCAACCTTTAAGAGACACCAAAGGAAACATGACCAACGTTATACACATACATGCCATATTTGTGCCAAAGGTTATTATTCAAAAGATCGTTATACGGATCACATGAATTCTCATTTAAATATACGTTCACATATTTGTACTGTATGTGGCAAAGCATTTATTACAAGTAGAGCATTAAAAACGCATTCGGTAACGCATGAGGATGAACGAAATCATGCCTGCAATTTGTGTGGTAAAACGTTTAAGCTAAAAATTGGGGTACTTCAACATATGCGAACTCATGGCACTAAAGTAGAAATTGACGGAAGTTATagtgataaattttaa
- Protein Sequence
- MFKTIIMKEIKTLYSFQIINETPNKRKTRLSPVVDNFMKSKTNVEILIELYKNQPSLWNKNLSDYRFKDKRQKIFQQITQDLNNKQTLNLTCDEVEEITAYICRYYTRRCYDYIKKNDGKINKRAWYFENLKFLRPKTIIQLEKLDPLLPDLKAEQIIQILQIYRGFPHLWNTDLIEYICSNKRDDAHNEMLKALETKMNLKISNEVLEEYLRTVHSYFSKEKQLRTNNSTNNETEKNMSNYYEQMLFLYDHEGPFSCSVCSRIKVKAFNFKVHKSQHDGTIPLQCSLCHNKFKGIRAYLNHAKRHLEDYEFDCKDCDRKFLHERDLEIHMHSHTGAQPFTCEICGKSYRHSQTFKKHQKKHKDTYCYTCNICNKGFYIKRCYTDHMNSHNNIRSFICNLCGKAFITRNALRTHSVTHDDERKHACNLCGKTFKLKIGIIKETAKKRTKKTSPHVDNFMNSKPNVIILIEAYKNQPNLWNKKLPDYRFRSTRQLIFKEITQDLNNKLNLNLTWKEVAEIMSYIKRKHRDDCKINHKEKHRKGKNYTRSWYFESLEFLRPTQIIQLEKLDSQLEDLVPEQITQILQIYREFPHIWNTNLIEYICSNKREEAHSEMLKTLEVKMNLKITIHVLEEYLRTIHNYFSKEKQLRLNKTPPTSGDSETVKQKSPDYYEQMQFLYDHEGPFNCTDCKRVYPKALTFKAHKSQHDNSMPFTCSQCNLQCKTISTYTIHAKRHFEDLKFGCDLCDKKYLNHKDLKNHMLSHSGAQPYCCEICGKNYRHAPTFKRHQRKHDQRYTHTCHICAKGYYSKDRYTDHMNSHLNIRSHICTVCGKAFITSRALKTHSVTHEDERNHACNLCGKTFKLKIGVLQHMRTHGTKVEIDGSYSDKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -