Pinf037959.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992540.1:97784039-97785733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6 1.4e+02 4.6 0.9 2 23 228 250 227 250 0.92 2 10 0.049 4.2 9.4 0.7 6 23 259 276 259 276 0.99 3 10 0.00027 0.023 16.5 5.0 1 23 282 304 282 304 0.98 4 10 0.0023 0.2 13.5 1.1 1 23 311 333 311 333 0.94 5 10 0.038 3.2 9.7 3.9 1 23 341 363 341 363 0.96 6 10 5.1e-07 4.4e-05 25.0 2.3 3 23 371 391 370 391 0.97 7 10 0.00011 0.0097 17.6 0.7 2 23 400 422 400 422 0.97 8 10 0.00043 0.037 15.8 0.0 2 23 430 452 429 452 0.96 9 10 1.6e-06 0.00013 23.5 0.9 1 23 458 480 458 480 0.97 10 10 0.00033 0.028 16.2 4.1 1 23 486 509 486 509 0.97
Sequence Information
- Coding Sequence
- atggagCACTGTATAGTTTGTTTACAGTCCAACGAAGATATGTTTTCACGTATTACCTCACAATCAAGTAAATGGAAAGAATCCAACATACAACGTATCATTGAGAAACATTTGTGGTGGTGGTACTTAAAGAAACCCTCTACTAAAGATGAATTACAATGGATTTGCCAAAAATGCTGGCTGGAATTATCATCATTTCACAATTTTTATTTAACTGTTCAAAAGGCCCACAATCAATTCCAAACTGTGTCCACAATctataaattatttgaaaatactGATCCTGCAGGAAAGCGAGAAATCGAGGTCAAGCAAGAACCTGATCCACTTCATAATGAAGAAACTTCTTCATTGGAAACCTGTAAGGATATTCAAATTGAAGAACACAATATAACGGATATCAAAAAAGAAATTTATATTGATGAAATTGATAATGTTACTACTGATAGTGATGATAATGGAGACAAAATGTTAATTCCCGAAATTAGCTATGATCCCATTATAAAACGTAAACGGAAACCTAAAATCTCAAAAAGTAACCCTAAtcgtaaaaaacctaaaaaatctATTGTTAAAAAAGCTGAGACTTCAGCTATTGTCCGTCGAAGTGTTGGTACTAATAAACAGGAACTCAATGCTGGAGCTTtcgaaaaacttttaaaagacaCTGAGTATAACCTTCATTGCAATATTTGTCAAGTGCCACTTGTAGATTTTCGTACTCTTAAAATCCACTTTACTAAAGAACATAACGTTCGTCCATATGCCAtgtgttgtaataaaaagtttttcagaCGATTTTTACTCATAGACCATTTAAATGTGCATAACAATGcggatttttttaaatgtcatattTGCAACAAAACATATGCAGTGCGTCGTTGTTTAGAAACTCACCTGAAAATTCACGAGGGACGAGAACGTAAATTTAGTTGCGAAGAATGCGATAAAtccttttttactaaaaaaattcttGAGGAACACAAGTTATTGCATATACCtggaattgaaaaaaatttcccatgTAGCCAATGTGACAAAAAATTTGCATCCGAGTATCTGTGTCGACAACATACATATACCCacaaaaaagcaaataaaaaaatttgtgataTATGTGGAAAGTCATTTACCCAAAGCCATTCATTTCAACGTCATATGAATGAACATGCAGGCATAGATCCAACTCCAGAAACATGCAGCATATGTGGTGTAAAACTTACAAATAAATATGGCTTAAGATATCACATGCGTATGCGACATTCTGAAGaaaatttagaacaaaaatgTCCCCAGTGTCCGAAAATTGCACCGAATGCAAGTGCTCTTCGTAATCACATTAAATACGCACATACCTTGGAACGGAAGCACGTTTGTCCTTTGTGTGATAAATCATTCAAACGTCCCTTGGATTTAAAAGAACATTTAAGTACTCATACCGGTGAAGCATTATATACTTGTGCTCACTGTCCAAAAACTTTTATGTCGAATGCAAATATGCACAAACATAGAAAAAATGCCCATCGTTTGGAGTGGGAAGAGGCCAGATTACAGAAATTTGATCGAGCACGCAGAAAAGAATTAACAACAAATGTCATGTTAGATTCTATTAGCAATAGTGAGACACCAGTCCAGACAAACATAAGTAATTTAACAATGGTTCAATCTAGTACATTTGTAAATACAAATTAa
- Protein Sequence
- MEHCIVCLQSNEDMFSRITSQSSKWKESNIQRIIEKHLWWWYLKKPSTKDELQWICQKCWLELSSFHNFYLTVQKAHNQFQTVSTIYKLFENTDPAGKREIEVKQEPDPLHNEETSSLETCKDIQIEEHNITDIKKEIYIDEIDNVTTDSDDNGDKMLIPEISYDPIIKRKRKPKISKSNPNRKKPKKSIVKKAETSAIVRRSVGTNKQELNAGAFEKLLKDTEYNLHCNICQVPLVDFRTLKIHFTKEHNVRPYAMCCNKKFFRRFLLIDHLNVHNNADFFKCHICNKTYAVRRCLETHLKIHEGRERKFSCEECDKSFFTKKILEEHKLLHIPGIEKNFPCSQCDKKFASEYLCRQHTYTHKKANKKICDICGKSFTQSHSFQRHMNEHAGIDPTPETCSICGVKLTNKYGLRYHMRMRHSEENLEQKCPQCPKIAPNASALRNHIKYAHTLERKHVCPLCDKSFKRPLDLKEHLSTHTGEALYTCAHCPKTFMSNANMHKHRKNAHRLEWEEARLQKFDRARRKELTTNVMLDSISNSETPVQTNISNLTMVQSSTFVNTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165848;
- 90% Identity
- iTF_01165848;
- 80% Identity
- -