Pinf010522.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992536.1:249607755-249624415[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00024 0.02 16.6 0.7 1 23 202 224 202 224 0.95 2 15 0.075 6.4 8.8 1.2 3 23 232 252 230 252 0.95 3 15 0.00042 0.036 15.9 0.5 1 23 417 439 417 439 0.98 4 15 0.076 6.5 8.8 0.2 1 23 445 467 445 467 0.98 5 15 0.00012 0.01 17.6 2.6 1 23 499 521 499 521 0.96 6 15 0.018 1.6 10.7 0.3 1 23 550 572 550 572 0.94 7 15 0.44 38 6.4 0.8 1 23 578 601 578 601 0.95 8 15 0.66 56 5.8 0.3 5 19 612 626 609 627 0.91 9 15 0.00039 0.033 16.0 5.6 1 23 636 658 636 658 0.97 10 15 0.086 7.3 8.6 1.7 2 23 664 685 663 685 0.97 11 15 0.00012 0.01 17.6 0.2 1 23 694 716 694 716 0.98 12 15 0.011 0.97 11.3 0.2 3 23 724 744 722 744 0.97 13 15 0.00014 0.012 17.4 0.5 1 23 750 772 750 773 0.95 14 15 0.014 1.2 11.1 0.0 1 23 783 805 783 805 0.96 15 15 0.033 2.8 9.9 0.0 1 20 1417 1436 1417 1439 0.93
Sequence Information
- Coding Sequence
- atgGATAATCATGGTTATGGCGGCATACAGTGGATACAACACCACTCTTCAGGAAATCATTCTTCCCATGGTGGAGATATGAAAACTGCTGGCCAGTTATTAATCGATCCTCAGCCTCCACGTGAAGAGGATCTAATGGCCAGTGCTAATTCTTCATCAGACTATTTAGCCACCACAGAAGATGAAGACGGCGATCATCCAACAAACATTGATCAAATAGCCgcagaaaatttaatatttatggcTCGTGATGGTCAAATGGTAACAGAGATTATAACGAATGCTACAACAGATCAAAATGGAACTGTGGTTGTGACTGCCAGCGATGGTGAACAGATTGATTGTGATGCTATAATGCATCAGGCTGCATTAATACAACAGCATGAAGATTCTGGCGGTGGAGTGTATAGTGTTGAGCACTATTCAGAGAATACACCACAGATGGTAACAGAAGAAGTGATAACGGATGATTGGGTACAACATCAAGGAGAGGAaagAGTTGAAATACCTGCTGAACAAATAATTGGTTCTGGTTCACAAGTCTTACTCGATATTGAAGTTCCTTTACCAACAGTACAAGATGAATATACTGCTCTACGTCCATATCCATGTGACTTTTGCAGTCGACGTTTTCGTAAAAAAGCCAGCCTTATGAATCATATGGTGGCCCATCAAACCGATAGACCACATTTGTGTAAATTATGTGGAGCAAGATTTTTAAGAAGACAAGACCTAATAAATCACTTAAAGGCGCATGCAGAAGAGTCAACAGAACCACAAATGGATGATAGTGATTtcatacattttgttaacGATACCACCTCTTCATCACAACGTACTTCCAATGATCATTATTATGAACAAGATTGGATTCACCACCACCACCAACAACCGCAAGAGCAGCAACAGCCAAATATTACCAATATTGTCAATAATCAAACATTAATGGAAAATACTAATAATTCAGCAATtattgttactcaaacaaatttAGCACCACCTAGAGGTCGTATTAGTCGCCTTAAACCCAAAGAGGATTCATATGTTGTAGAAGTTTCAAATAATTGTACGTCAGGTGGTCTTAATATGTCATCGGCTTTTAGTATTGTGGAATGTGATACATATTCTGATTCTACTGCTACTGTTAAACTTTCTCAAGAAAATCAAACAATACCCGCCTTGCAAGTtacgcaacaacaacaacaaaatgtagtcataCATTATCCAGTAATAGATGATAGTAAACCCTTTGTTTGCCAACAATGTGGTTTGGCATTTTCCCGAGAGAAGGCCATGTTATCACATACAAAGACCCATCGAAACGATTCTCCTTTTGAGTGTCCCCAATGTAATGATCTATTTTGGGATCAAGCTAGTTTACAAGATCATCAAAAAACACATCAATTTGAAGAAAGTAATTCTGAATATGATCCCAATGAAGGAGAAGATGAAACACAAAGTGAATCAGAGTCCGAACAACAATTATATGGTGAATTTTATTGTAGCGAATGTGGCATGTCTTTTCACCGTCAAGATCTTTTACGGCGACATTCAAAAGCTCACGCAAAAGGAAATCATGGTGGTAGTAATGGTCAATCTAACAATAATAATACTAATAATGATGGTGCCATTGATAGCAAGGATCAACATTGTTGTAATACCTGTGGTGAATCATTTGCTGAAGCTTTAGATTTATTAGCACATGCTGAAATACATGCTCGTTACCCGCCCTTTAAatgtaTTTTATGTGGTGAATCTTTCTTTGAGGAAACAACCATTAAAAAACATCTACAATCTCAACATGCCAATGAAATGACTGAAAATTCTTGCATATTGTGTGGCAAAGAATGTCGTGATCGTAAGGCCTTAATTAAACATGCCTGGGATCATTCAAGAGAAAAGTGTCACTCTTGTTCaaaatgtggtaaaaattttCACAATAAAGCCCGCCTTAAACGTCATATGGCTTCGCATCGTGATAAATCCGTACAATGTGATGTTTGTCATGAAGAGTTTCCCGATGGTCGTACTTTATCCAATCATCGTCATTCTCATAGTGCCACTTCAGCTGGTAAACTGTTTCCCTGTCTGGAATGTGGTAAAACATTCGGTTCTCGTAGTTCGCAACAAATACATGTTCGTATTCATACGGGTGAACGACCGTATGGTTGCCGTTTTTGTTGGAAAGCTTTTGCCGATGGTGGTACTCTTAGAAAACATGAACGCATTCATACGGGTGAAAAACCTTATGCTTGCTCGGTGTGTCCTAGAGCTTTTAATCAGCGTGTTGTTTTACGTGAACATATACGTTCGCATCATTCGGGTTTAGATACTAAAAGAGGAACGTATTTTTGTACTGTTTGTGGTGCTGATTTAACGTCATCGGGAGATTTGATACAACATTTAATACAGCATAGTGATATGAATACGGCCATGCAAAGACAACCAGTGACTGGTCCCCGAAAATATAAACGTAGACGGAAGCTAAAACCTCATGAAATTGCCCGCTTAAAACGTGAAGGAAAACATAATGGTGGAACTGGCAGTGACATTGATTTATCAGATTTTGACATGGATAATGTAGATGATTTACTAGCAATGACAGATAGCAATACTGCACCGGAAAACACTACAACATCTCATGATAATTCACAAGTAaatttggaaaaacaaaaaaatacatcgTCATTTTCTGGACAAGCAGAAAACAACAATGATCATAAAAGTAAAATCAACGCCACAACCTCTTTCAGTAAAACAAAATCTCATATAATGGAACAGGAAGATTTTGATTTAGATGTTGGCATAGATGAAGATCATAAAAAGGTACGATATAATTCTACGAGTAGTGATAAAATATGGCCAACGAAACAAACAAATGAAGAGACTTATAAATCATTGCTATCGAATTTGGAAACTACACTACAGAGTATAGATACATTAGTGGTAGGACCATCATCGTCAGCATCAACCCAGACAACTGAAACAATTGTGACTACTAACAATCAAACATCACAACACCAGCAGCAAACAAAACGTAAAATAAAACAAGAATCATCATCAACAGCACAGCGTACGCAACAGGTACAAATAAGTAGAGCAGCAGAAAAAGAAACAGGAGGTGGTGCAAACAACACTACTTCAAATGCAAGAGGTCGTAAAAGTAAAGCAGAAAAGGCGGCAGCAAAGCAATCGAAAGGGCCGCAAATGATACATACAGAAAAATATACAATTCCTGCGGGTGAAGGAGGATCATCAGGAAAAAGAAAATCAAAATCTATAATAACCCGCACACAAACAACAAATATTGATATATTACCCAAGACTTCAGCAATTGTGGATGATTATGATATTATATCACCAGCATTACAACCGCCTAAACAAATTAGTTCTAGTCCCTTGCATATTAAACAAGAACATGATAATCATCATCACCATCATATACATCATCATCATCTTCAAAGTCATCATTTAATGAAAAATCCTCCAAATTCAGATCATACTACATCAGCTAGAACACAAACTACAACTCGCCATACAAATGCTAATGATCTCTACGATGCCCATTTACTATTGGAAGCTTCTGGTTTACGTAATGATTTAGAAGAGATACTTAGATCCCCAATGAAATCAGATAAATCTCATGAACGGCAACGTTTTACCAGTGAATCGTCTACACAATTTTTAGCCGAACAATCAGAAGAAGAAACACATTTAATTAAAATAGAACCTACCTCACCAGATTTAAGAGAAATTGTTAATGGCGCCAGTTCGGTAAATACATCAGCAACACAACAAGCAATGGAATTGGGTGTGGGCCCTTCATCGTCCTGCTCCACCAAACAACCAAGAAGAACTAATAAATCTTCAAGATCCCAGAGAACGGCAAAttcaaatagaaaatatttagaaTTTCCAGGTGACTTACAACAAACTATCATGACTACGACGGTGACAACAACAAAGAGTAGTAATAGCAAAAGATCTAGCAATAGTTTAAACTCTGCCTTTAACAAATCAAAGTCGTCATCTAAGTCAGCCAGAACTGAACCAGCTAAAACATTAAAATCTTTACAAAATTCTACTTCGTATTTAGATTATACTATGGTGGATACTTTTAATACGGTTACCAGTTCCTCGTCAAATCATAATAATTCGTTTTCTTCAATCTCAGCTGTAGTATCAGCAGCAGATGCTTCAGCTGCTGCCCAACAAAATCCCCCTCCTGCCCGTAAACTTCAACGTTATTTTGAATGTGAAATGTGTTCGGCTATATTTTCAGATCGTGCTCAACTATTGGATCATGTACCCATACACATATAG
- Protein Sequence
- MDNHGYGGIQWIQHHSSGNHSSHGGDMKTAGQLLIDPQPPREEDLMASANSSSDYLATTEDEDGDHPTNIDQIAAENLIFMARDGQMVTEIITNATTDQNGTVVVTASDGEQIDCDAIMHQAALIQQHEDSGGGVYSVEHYSENTPQMVTEEVITDDWVQHQGEERVEIPAEQIIGSGSQVLLDIEVPLPTVQDEYTALRPYPCDFCSRRFRKKASLMNHMVAHQTDRPHLCKLCGARFLRRQDLINHLKAHAEESTEPQMDDSDFIHFVNDTTSSSQRTSNDHYYEQDWIHHHHQQPQEQQQPNITNIVNNQTLMENTNNSAIIVTQTNLAPPRGRISRLKPKEDSYVVEVSNNCTSGGLNMSSAFSIVECDTYSDSTATVKLSQENQTIPALQVTQQQQQNVVIHYPVIDDSKPFVCQQCGLAFSREKAMLSHTKTHRNDSPFECPQCNDLFWDQASLQDHQKTHQFEESNSEYDPNEGEDETQSESESEQQLYGEFYCSECGMSFHRQDLLRRHSKAHAKGNHGGSNGQSNNNNTNNDGAIDSKDQHCCNTCGESFAEALDLLAHAEIHARYPPFKCILCGESFFEETTIKKHLQSQHANEMTENSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVQCDVCHEEFPDGRTLSNHRHSHSATSAGKLFPCLECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDTKRGTYFCTVCGADLTSSGDLIQHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHEIARLKREGKHNGGTGSDIDLSDFDMDNVDDLLAMTDSNTAPENTTTSHDNSQVNLEKQKNTSSFSGQAENNNDHKSKINATTSFSKTKSHIMEQEDFDLDVGIDEDHKKVRYNSTSSDKIWPTKQTNEETYKSLLSNLETTLQSIDTLVVGPSSSASTQTTETIVTTNNQTSQHQQQTKRKIKQESSSTAQRTQQVQISRAAEKETGGGANNTTSNARGRKSKAEKAAAKQSKGPQMIHTEKYTIPAGEGGSSGKRKSKSIITRTQTTNIDILPKTSAIVDDYDIISPALQPPKQISSSPLHIKQEHDNHHHHHIHHHHLQSHHLMKNPPNSDHTTSARTQTTTRHTNANDLYDAHLLLEASGLRNDLEEILRSPMKSDKSHERQRFTSESSTQFLAEQSEEETHLIKIEPTSPDLREIVNGASSVNTSATQQAMELGVGPSSSCSTKQPRRTNKSSRSQRTANSNRKYLEFPGDLQQTIMTTTVTTTKSSNSKRSSNSLNSAFNKSKSSSKSARTEPAKTLKSLQNSTSYLDYTMVDTFNTVTSSSSNHNNSFSSISAVVSAADASAAAQQNPPPARKLQRYFECEMCSAIFSDRAQLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -