Pinf022109.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:51891206-51901254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.38 32 6.6 0.9 2 23 424 446 423 446 0.96 2 10 0.037 3.1 9.7 0.1 6 23 456 473 456 473 0.99 3 10 3.8e-05 0.0033 19.1 2.7 1 23 479 501 479 501 0.98 4 10 3.4e-05 0.0029 19.3 2.9 1 23 514 537 514 537 0.92 5 10 3.4e-05 0.0029 19.3 2.0 1 23 545 568 545 568 0.98 6 10 3.6e-05 0.0031 19.2 2.0 3 23 576 597 574 597 0.92 7 10 0.0073 0.62 12.0 0.3 2 23 609 631 608 631 0.96 8 10 0.00092 0.079 14.8 5.3 1 23 638 661 638 661 0.93 9 10 1.2e-05 0.001 20.7 0.7 1 23 667 689 667 689 0.98 10 10 0.0002 0.017 16.9 1.3 1 23 695 718 695 718 0.97
Sequence Information
- Coding Sequence
- atggtGGTTAAGTGCCTACTATGCTTAGAATATCCAACTATACCGGGTCccaaatttttagaaatatttggcGATGAAGGCTTACGATTAGATATAAGTGCGATTATTAATAAACATTTTTGGTTAAAGACAAACCGGAATTCGGAAAATGTGCAAAAAATATGTATGACTTGTTGGGAAGTAGTAAGAGATTTTCATATACTCTACCAGAGAGTAGAAGAAGTCCATAAACATTTAGAATTAAAAACTATAGTTATAGATGACCCTCTGCCTCAGGATGTTATGCTTAAATCGGAAATGGATCACTCCATGGCCCAAGATCCCATTATGGGTGATAATTGTTTGGACGATTCCATATTCGATACTGAGGTCAAAGTTGAGGTCCATGATTTGGATTTACTACCACAAATTGAAATAATAGAAACAGAGGAGGCGGTTAATATAAGTGGACGACCAGTTCGATCAAATCGCCGTGGTCGCCAATCGGCGCGAGATCAAAGTCCAAAAGTTTCGGCAAAACGTATAAAAAAAGAGCAATCTCCTGCTAATGACAAAGATCTTAATTTGGATATTTTCTCAGAAAATGAACATTTTAATGATACTTTAAATTCTTCTGGATCTTTTGAGGATGTTAACCAGTCCCTGCTGATGCGTCCAATGGATACCGATGAAAATGAAGATTCTAGCAATAAGAGAAAAGGTAGAACTCGTAAGGCAGCCACAGTTAAACCTAAAACTACTACACCTCGTGCAAAACGTACCAATAAAAAACAACAGCTAAAAGATCAAACATCTtcggcaaaaattaaaaatgaaaaagatACCGAGGCAGAAGGCGAAAAACCATCATGTTCCACAGCACAAACTACCGGCACATCAGCAGCACAAATTAAAACTGAAAACTCTGGAGATAATCCAGCAAGTTATGAAGATTTTGCTGCTGGTGATGATCAATTTGATGATGCTTATGCTcaagatgatgatgacgatgacgaGTACAATGATAATAATTATCAAAAAGCATCGGATGATTCCTCTAATTCTGATTTAGAATCAGACGATTCAAATGCCTCTGATTGGGGTGAAGCACAAGGAAAGAAGGAAAAGTTTGCTGTTATAAAGAAAAAAGAACGAAATActcctaaaaaatataaaaaacgcgacAAACCGTCAGTAGAACCAAAACGTATGTCTCGTGAAGAAATTGAAGCCCGACAGGCTCAACAAGCTGAATATGATACAATCATAACGAAATTCTTTGAACAAATACGTTGTCCCAAATGTGAACTCAACGTTCACACCTTTGGTGAAATGCGTGCACATTTTCGCACTGATCACAATGATGATCATGGTTTTGTTGAATGTTGTGGTCGTCGTTTTGCTACTCGCAAATTCCTCGCTGAACATATTTTGGTTCATTACAATCCTGAACATTTCAAATGTAAGACATGCGATAAAATATGTCGTGATTCTTCACAATTAGAATCGCATGAAATAACACATATGGATAATCCACCGCCCTCTAAATACAAAAAATCGTTCCAgtgtgaaaaatgttcaaaaacaTTTTCTTCTAAAGCTTCGTTTGAACATCATATGGTTGCTAAACACGTACCACGTGAAGAATTTAAATTTGAATGTCCTGAATGTAAGAAAAAATGTCCTACTGAGACCAAATTAAAAGACCATATGCGCAGTGTGCATGATCCTCAACGTACGGTTATATGCGATAAATGTGGTAAAACATTTAAGAGCACCTATAGTCTTAGAAAGCATCATGAACTAGAACATTCGGATATACCAAAACCAGCGCCAGTACCACAACAATGTGAAATATGTGGTGCATGGTTACGGCATGCATCGGGTCTTAAGCAACATATGAGAAATATACACGAGGGTATACCAATGGAACACCGTTGTCATATTTGCAATAAAGTCTCCTCAACAGCCAGAGCTTTGAAAAGGCATATCTATCATAATCATGaatgtattaaaaaattccagTGTACCATGTGTGAGAAGGCATTTAAAAGGGCACAAGATTTAAGGGAACATACTTCAGTTCACACTGGCGAAGTTTTGTATACATGCCCCAATTGTCCTATGACATTCTTTTCGAATGCCAATATGTATAAGCATCGTCAACGTTTGCATCGTGCCGAATGGGAGTCAGATCGTAGTAAACCTATACCGCCAAATATTATGAAACAAGCTAAACAGGGTAGTAAATTAATAAAACTGAAACGTAATACTGGTGATAGCACAACATCATCACATTTGGTATCACCAATGGGTGCTATACCTACTACACATCCGATTTTAAATCCTCAATTAACTATGGCATACAATATGGCATTACATTAA
- Protein Sequence
- MVVKCLLCLEYPTIPGPKFLEIFGDEGLRLDISAIINKHFWLKTNRNSENVQKICMTCWEVVRDFHILYQRVEEVHKHLELKTIVIDDPLPQDVMLKSEMDHSMAQDPIMGDNCLDDSIFDTEVKVEVHDLDLLPQIEIIETEEAVNISGRPVRSNRRGRQSARDQSPKVSAKRIKKEQSPANDKDLNLDIFSENEHFNDTLNSSGSFEDVNQSLLMRPMDTDENEDSSNKRKGRTRKAATVKPKTTTPRAKRTNKKQQLKDQTSSAKIKNEKDTEAEGEKPSCSTAQTTGTSAAQIKTENSGDNPASYEDFAAGDDQFDDAYAQDDDDDDEYNDNNYQKASDDSSNSDLESDDSNASDWGEAQGKKEKFAVIKKKERNTPKKYKKRDKPSVEPKRMSREEIEARQAQQAEYDTIITKFFEQIRCPKCELNVHTFGEMRAHFRTDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKICRDSSQLESHEITHMDNPPPSKYKKSFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTFKSTYSLRKHHELEHSDIPKPAPVPQQCEICGAWLRHASGLKQHMRNIHEGIPMEHRCHICNKVSSTARALKRHIYHNHECIKKFQCTMCEKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWESDRSKPIPPNIMKQAKQGSKLIKLKRNTGDSTTSSHLVSPMGAIPTTHPILNPQLTMAYNMALH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -