Pinf041846.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992540.1:212589932-212595327[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 12 8.0 0.0 2 23 224 246 223 246 0.93 2 12 0.06 5.1 9.1 1.7 6 23 255 273 255 273 0.95 3 12 5.2e-06 0.00044 21.9 1.4 1 23 279 301 279 301 0.98 4 12 1.4 1.2e+02 4.8 0.0 2 23 357 379 356 379 0.94 5 12 0.072 6.2 8.8 0.2 6 23 388 406 388 406 0.94 6 12 1e-06 8.6e-05 24.1 0.3 1 23 412 434 412 434 0.99 7 12 0.011 0.95 11.4 1.0 1 23 442 465 442 465 0.83 8 12 0.0062 0.53 12.2 0.0 3 23 473 492 472 492 0.96 9 12 0.0066 0.56 12.1 0.1 2 23 501 523 500 523 0.95 10 12 0.00052 0.044 15.6 0.6 2 23 532 554 532 554 0.94 11 12 0.00048 0.041 15.7 2.9 3 23 561 581 560 581 0.92 12 12 0.015 1.3 11.0 3.4 1 23 587 610 587 610 0.95
Sequence Information
- Coding Sequence
- ATGGATAATTGTTTATTGTGTTTGCAAAAAAAGAAGGAATTTGTTGATGGCATAAAAGTTGATTCATTACAATGGCAGAAATATAATGTAACACATGTTATAGAAAAACATTTCTGGATAATGGAATCATTATTACCAGCCTCTTGGCTTTGCATTACTTGCTGGGAGGCATTATATAGTTTCCATCAATTCTATATGGATATTGAAAAGGCTCATAGAGATTTTGGCAAACTAATTCCAGCAGAAGATGCATTTAAAAATCTTGAAGAAAATAAAGAAATGGTTTTAAAAGTTGAAATATATCCGGACATTTTGATAGATCAATATCCAAATGAAGATTTTGAACTAAACATTAAAGAAGAACAAGATTATCAAAGCAATGAAAATATATCAAAAAGCCATTCCAAAGACGAAGAACCAAAAAATGAAGAtcctttaaaaacaacaacatattcaAACACATTCTTTCAACAAAGCAATAAGAATGAAGAAATTTGTAAACGATCAAAAACACAAAGTTCCAAAAAAACTAAACATGAAATTAAGAACGAGAATCAAGAGCACAAGGTTTCACAAACGCCaattaaagctaaaaaaaagtacaatatgAGAAGGCCTAAACAAAGACCAGAAGAAGTTGCAAAATTTTTGGCTGAACACTTTAAAATGACCTGCCCTATTTGCGAAATTCCAATGACCGATTGGGAAGCTCTTAGTAAACATTTTGAAATTGTACATAAAGAGCGAACTTATGCTGTATGTTGTAAGAGGAAGTTTGTTCGTCGTAGCGAGTTACGGGATCACGTACATGTACGTCATGTAGATCCAGATAAATTTAAATGCAATCAATGTGGTAAAACGTTTTCCCgtgaactttttttagaaaatcataTATTGAGACATTTACCTGAAGAAAGTTTTAAACAAAGTACACAGGAAATGGAAAAAACAAATCAAGAGCTCGAAATTTTGCAAACGCCACCTAATGctaataaaaaatacaatattAGAGTGCCTAAGAAAAAACCAAAAGAAGTTGCTAAACTTTTGGCTGAGCACTTTAAAATTACCTGCGCTATTTGTCAAATTCCAATGACTGATTGGGAAGCTCTTGGTAAACATTTTCAAGTTGAACATAAAGAGCGGACTTATGCTGTATGTTGTAAGAGGAAGTTTGTTCGTCGTAGCGAGTTATGGGATCACGTATATGTACGCCATGTAAATCCAGATAAATATAAATGTAATGAATGTGGTAAATCCTTTGGCCGTGAAAGTGTCCTAGAAAATCATATATTGAGACATTTACCTGAAGAGGAGAAAGAATTTGCATGCCCTGAATGTGGTAAAAAATTCGCTAAACAAAATTTCCTCGACTGTCATGTAAGAGCAGTACATTTAAAAAGATATATGAAGATCTGTGAAATATGTGGAAAATCCATATATCCCGAGGAATTGGCACGTCATATGTTAGAACATGAAGGAAAATCCTTACCCACAGTTTATTGTGAAATATGTGGGGTTGCTATATCTCAAATGAAACTTCTTAAGATACACATGAAAAATCAACATCCGGAGGGAGGAAAACAAGCAGCAACCTGTACCATATGCAATAAAGTATTAGCTAGTGCTGCTTGTCTTAGAAGGCATATGGACTATGTACATACGAAAAATATCCGCAAATGCATATTGTGTGGTAAGggtttcaaatcaaaaaaatgcCTGACGAACCATATGGCAACTCATACAGGTATCGCATTACATACATGCAAGTGGTGTCCGAAAACATTTTATGCTAAAGGTAATATGTCATCtcataacaaaaaatatcatccAGTTGAGTATGCTGAAGAACTCCAAAAAAGacatttaaaaagatttaaaCAACCTGTTGAAGATGAAACACATAATATCGGgtcttaa
- Protein Sequence
- MDNCLLCLQKKKEFVDGIKVDSLQWQKYNVTHVIEKHFWIMESLLPASWLCITCWEALYSFHQFYMDIEKAHRDFGKLIPAEDAFKNLEENKEMVLKVEIYPDILIDQYPNEDFELNIKEEQDYQSNENISKSHSKDEEPKNEDPLKTTTYSNTFFQQSNKNEEICKRSKTQSSKKTKHEIKNENQEHKVSQTPIKAKKKYNMRRPKQRPEEVAKFLAEHFKMTCPICEIPMTDWEALSKHFEIVHKERTYAVCCKRKFVRRSELRDHVHVRHVDPDKFKCNQCGKTFSRELFLENHILRHLPEESFKQSTQEMEKTNQELEILQTPPNANKKYNIRVPKKKPKEVAKLLAEHFKITCAICQIPMTDWEALGKHFQVEHKERTYAVCCKRKFVRRSELWDHVYVRHVNPDKYKCNECGKSFGRESVLENHILRHLPEEEKEFACPECGKKFAKQNFLDCHVRAVHLKRYMKICEICGKSIYPEELARHMLEHEGKSLPTVYCEICGVAISQMKLLKIHMKNQHPEGGKQAATCTICNKVLASAACLRRHMDYVHTKNIRKCILCGKGFKSKKCLTNHMATHTGIALHTCKWCPKTFYAKGNMSSHNKKYHPVEYAEELQKRHLKRFKQPVEDETHNIGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -