Pinf025906.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:166959276-167000158[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.73 62 5.7 1.1 5 23 17 35 15 36 0.91 2 12 0.00023 0.02 16.7 0.7 2 23 62 84 61 84 0.97 3 12 0.015 1.3 10.9 4.1 1 23 91 114 91 114 0.95 4 12 3.3e-05 0.0028 19.3 1.8 1 23 121 143 121 143 0.97 5 12 0.00028 0.023 16.4 5.8 1 23 150 172 150 172 0.96 6 12 9.5e-06 0.00081 21.0 1.3 1 23 178 201 178 201 0.98 7 12 0.046 3.9 9.4 2.8 2 23 288 309 287 309 0.97 8 12 0.00012 0.011 17.5 0.7 2 23 327 349 326 349 0.96 9 12 0.006 0.51 12.2 4.9 1 23 356 379 356 379 0.97 10 12 0.00044 0.038 15.8 1.1 2 23 385 406 385 406 0.96 11 12 0.00022 0.018 16.8 1.7 1 23 413 435 413 435 0.97 12 12 6.5e-06 0.00056 21.6 2.7 1 23 442 465 442 465 0.98
Sequence Information
- Coding Sequence
- ATGGACAGGAACAATGAGCAAGAAATGTCTACGAACATCGTTCACGGCAACTGCGCTGAAAAATTTACAAGAAATGTCTATTTGGACACTCATGTTATAAAACATCATCCAGAAAGTAAAATACATCAACAATACACCACAACACAGCAATGGACACCCGGCGTTAATATTCCCGAGGAAAATCAATGTGATTATTGTGGTAAACAACTGACTTCAGCTGAATCATATCGACTACATATAAAACGATTTCATCCAAATGCAAAACCACCTCATAAATGTGGAGAATGCAAAGAGAGATATTATACACTTAAGAGTCTAAGTCGACATAAAAATCTAAAACATTCCGATAATGATAGACCTTTTAAATGCGATGTTTGTTTCAAAAGTTTCAAATTCCAGTCAGTGTTAACACGACATACAGCGGTACACTCTGACCTTCCACCACAGCATTCATGTTCGATATGTCCAGCTAAATTTCGACATAAATACACATTGAAAACTCACATGCAGTTTCATTCAAAAGAAAAAGCATTTAAATGCGACATATGTTCAGAAGAATTTGTCCACCCAGATTCACTTGAAAGACATACTAAAAAAAGTCACAGCGATACTACCGCCGCATCTGGGAATATTAACGCACTAGAAAAAGATGAAACAGCATTAATTATAAGCGGTAATCGATTAGAAGATTCCCCCACTTCTTCTTATGTGTACATTTCGAATAACGAGGTCGTTAAACCTGCCGAAGATAAACAAAAATGTGAGGTAGTTGAACTTACAGGAGCTGATCATGAAATATATTCTTCATCTTTGAATAAAGAAGTTTCCTGGGATTCTCAGAAAAACACACCCAAAAGAAACCAATGTGGTGATTGTGGAAAACAATTAAAAACATCGCAATCACATAAAAAACATTTACTTATGCATACAAAAATTATATTGCAATGGACACCTGGAGTTAATATTCCCGAGAAAAATCAATGTGATTATTGTGGTAAACAACTGAAAACATCGCAATCATATCAAGTTCATATGCAAAACATTCATCCAAATGTAGACCCACCTTATAAATGTAAAACATGCAATATGACATATTTCAATCTTAACAGTCTTACTCATCATGAAAGGCAACAACACTCCGATGAATGTCGTAAATGTGATATttgtttgaaaagttttaaatacTTGTCAGATCTTACACTACATAAAGTGAGGCACTCTGACCTTCCACCACAGCATTCCTGTTCGATCTGTCTAGATACATTTCGATACAAAGGAAGTTTAAAAGCTCACATGCGCATTCATTCAGAAAGTAAACCATCATATAAATGTGGTATATGCTCAAAAGCATTTGTTCACTCAACTTCACTTCGCAGACATACTAATAAACTTCACAAAACCAACGCTGGGAATATTAAcctactataa
- Protein Sequence
- MDRNNEQEMSTNIVHGNCAEKFTRNVYLDTHVIKHHPESKIHQQYTTTQQWTPGVNIPEENQCDYCGKQLTSAESYRLHIKRFHPNAKPPHKCGECKERYYTLKSLSRHKNLKHSDNDRPFKCDVCFKSFKFQSVLTRHTAVHSDLPPQHSCSICPAKFRHKYTLKTHMQFHSKEKAFKCDICSEEFVHPDSLERHTKKSHSDTTAASGNINALEKDETALIISGNRLEDSPTSSYVYISNNEVVKPAEDKQKCEVVELTGADHEIYSSSLNKEVSWDSQKNTPKRNQCGDCGKQLKTSQSHKKHLLMHTKIILQWTPGVNIPEKNQCDYCGKQLKTSQSYQVHMQNIHPNVDPPYKCKTCNMTYFNLNSLTHHERQQHSDECRKCDICLKSFKYLSDLTLHKVRHSDLPPQHSCSICLDTFRYKGSLKAHMRIHSESKPSYKCGICSKAFVHSTSLRRHTNKLHKTNAGNINLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -