Pinf025981.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:167835089-167839185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.2 4.5e+02 3.0 0.5 9 23 12 27 7 27 0.86 2 19 3.5 3e+02 3.5 4.0 2 23 53 75 52 75 0.95 3 19 0.00018 0.015 17.1 0.4 1 23 82 105 82 105 0.94 4 19 0.00027 0.023 16.5 0.9 1 23 113 135 113 135 0.98 5 19 0.00083 0.071 14.9 3.0 1 23 140 162 140 162 0.98 6 19 0.003 0.26 13.2 1.7 1 23 168 191 168 191 0.96 7 19 1.1 96 5.1 1.3 2 23 246 268 245 268 0.93 8 19 0.0054 0.46 12.4 2.0 1 23 275 298 275 298 0.96 9 19 6.6e-06 0.00056 21.5 0.3 1 23 306 328 306 328 0.98 10 19 3.5e-06 0.0003 22.4 1.1 1 23 335 357 335 357 0.97 11 19 0.00075 0.064 15.1 1.0 2 23 364 386 363 386 0.94 12 19 1.8 1.6e+02 4.4 4.7 1 23 411 434 411 434 0.93 13 19 9.1e-05 0.0077 18.0 6.6 1 23 439 461 439 461 0.98 14 19 0.00015 0.013 17.3 3.5 1 23 566 588 566 588 0.97 15 19 0.00079 0.068 15.0 1.7 2 23 616 638 615 638 0.96 16 19 5.6 4.7e+02 2.9 0.3 1 20 645 664 645 668 0.86 17 19 0.0001 0.0085 17.8 2.2 1 23 675 697 675 697 0.98 18 19 0.0094 0.8 11.6 9.3 1 23 704 726 704 726 0.97 19 19 6.2 5.3e+02 2.7 0.2 11 23 731 744 727 744 0.84
Sequence Information
- Coding Sequence
- ATGTCCAACTCTGAACACcaaatatgtatattagaTTTTAAAAGTCTAGGTCATTTAAACAACCATGTCACTAAATTTCATCAAGAAAGTGATATACATGAACAAAATAGTACAACACAGCGATGGACACGCGGCGTAAATATTCCCAAGAAAAATCAATGTAACTTTTGTGGCAAACAACTTCATTCACCTTCTTCACATTACACGCATATAAAAAGAATTCACACAAATGAAAAATCACCTTATGTATGTAAAATATGCAATGAGGAATATTATACACCAAAGAGTCTTAATCGACACGAACAACTAGATCACCCCTCTGGTAATAAGAGACCTTATAAATGTgatatttgttttaaatattttaaaatattatcagAGTTGACACGACATGAATTGGTGCACCTTCCACCACAATATTCATGTTCGTTATGTCCAAGTAcatttcgatataaacaaaacttTAACACGCACAAGCGCATTCATGCCAATGAGAAACTATTTAAATGTGTCATATGTTCAGAAGAATTCATTCACAAAAATTCTCTTGATAGACATACTAGCAAAATTCACAGCGATAACACCGCCGAAAAAGATGAATCAGAATCAATCAATAAAGATAATCGATTAGAAGATTCTCCCATATCTTCTTCGGGCACATTTAAAAATGATTTACTTATTAAAACAAGTAACAAACCTCAATGGATACCTGGAGTAAATATTCCCAAGGAAAATCAATGTGATTACTGTGGTCATCAATTGACAACATctttaatatatcaaaaacatATACAAAATTTACATTCACATGCAGAACCACTTTATAAATGTAAAACATGCAATAAAACCTATTTAACACTCAGCAGTCTAAACATACACGAAAGCCGACAACACTCCCGTAATGAAATATCACCTTATAAATGTGATATTTGTCCTAATAGTTTTAAAAACCTTGCACAATTACGACGACATGTATTGGTGCACTCTGACCGCCCACTACAGCATTCATGTCCGATATGTCCAGCTAAATTTCGACATAAAGGCAATTTAAACATCCACATGCTCATTCATACAAAAGAGAAACCATTAAATTGTAACATGTGTTCAGAAGAATTTGTCCACCCAGATTTACTTAAGAGACATACTGAAAAAATGCACAGCGATACCACCACATCTGGGAATATTAGCCCACTAGAAATAGATGGCTTTCATCCAGAAGTAAATCCACCTCATAAATGTGAAAATTGCAATAAGGAATTTCTTACACGTAAGATTCTAACGCGACATAAAAGCCGACGACACTGTAGTAGATTTCATAAATGTCATATTTGTTCTTTAAGTTTTATACAATCGTCACATTTAAAACAACATTTGTTGTCGCACTCTGACCTTCCGAAAAAAGTCCACCCAGATTCACTTGAACCACTAGAAATAATTAATAAATCCGAATTCATTAATAAAGATGATCGATTAAAAGATTCCCTCTCATCTTTTGAGGAATTTGTTCATACAGTTTCACTTGAAGAACATACTAAGAAAATTCACAGCGATAACACCGCCGCATCTGAAAATGTAAAACCACTAGAAAAAGATGAATTAATTAATAATGATGATCGACTAGAAGGTACCCCAACATCTTCTGATATGCACACTTTGAAAGAGGATATTGCAAAACTTGGCGACCTTCCACCACAGCATTCATGTTCGATATGTCCAGCTAAATTTAAACACAAAGGCAATTTTGACTCTCACATGCGCATTCATTcaaacgaaaaacaaaatttacttattcatacaaataataaaaattcatggaCACCTGGAGTTAATATTCCCGAGAAAAATCAATGTGATTATTGTGGTAAACAACTTAAATCATATTCAACATACAAAAACCATATACAAAACAAGCATCCAAATGAAAAACCGCCTTATGTTTGTAAAGCTTGCAATGAAGGATTTTTTTCACTCTACATTCTAAACCAACATGAAGGCCTAAAACACTCTGGTATTGATAGACCTTATAAATGTGATATTtgtttaaaaagctttaaacatTTGTCACGTTTAAAAATACATATAGTGTCGCATTCTAATCTTCCACCACAGCATTCATGTTCGATATGTTCAACTAAATTTCGACACAAATGTAACTTTTACGCCCACATGCGCCTTCATTCAAAAGAATCCGCCGACTTAGATTCACTTAAAAGACATACTAAAAAATTGCACAGCAATACCAATGCATTTGGCAATATTAAACCACCAAAAGTAGAGGAATCAAAATTAGTTAACGTTAATCGATTAGAGCATGATTGTTCGGAAACTTCTGAGTATGAATCAAACATGTTAGTTGATTTTCCTGAAGAAAGTCAACAACAATTACCTTCCACGCCTAAACAACAATTTAGGAACTCTGAATGCTCTATAAATCCACAAAACATTCTTAAAAATGCTTCGAATTCTACATCAACTACCGAATCAAATTTAATTGAATTTGTCAAGGTTGAGAAATATCAAATAACAGAACAAAATGTTGAAGAATTAAAAACTGACAAGCCTAAACTTAGTACTATTTATAATATAGAAGATTTTATTTAA
- Protein Sequence
- MSNSEHQICILDFKSLGHLNNHVTKFHQESDIHEQNSTTQRWTRGVNIPKKNQCNFCGKQLHSPSSHYTHIKRIHTNEKSPYVCKICNEEYYTPKSLNRHEQLDHPSGNKRPYKCDICFKYFKILSELTRHELVHLPPQYSCSLCPSTFRYKQNFNTHKRIHANEKLFKCVICSEEFIHKNSLDRHTSKIHSDNTAEKDESESINKDNRLEDSPISSSGTFKNDLLIKTSNKPQWIPGVNIPKENQCDYCGHQLTTSLIYQKHIQNLHSHAEPLYKCKTCNKTYLTLSSLNIHESRQHSRNEISPYKCDICPNSFKNLAQLRRHVLVHSDRPLQHSCPICPAKFRHKGNLNIHMLIHTKEKPLNCNMCSEEFVHPDLLKRHTEKMHSDTTTSGNISPLEIDGFHPEVNPPHKCENCNKEFLTRKILTRHKSRRHCSRFHKCHICSLSFIQSSHLKQHLLSHSDLPKKVHPDSLEPLEIINKSEFINKDDRLKDSLSSFEEFVHTVSLEEHTKKIHSDNTAASENVKPLEKDELINNDDRLEGTPTSSDMHTLKEDIAKLGDLPPQHSCSICPAKFKHKGNFDSHMRIHSNEKQNLLIHTNNKNSWTPGVNIPEKNQCDYCGKQLKSYSTYKNHIQNKHPNEKPPYVCKACNEGFFSLYILNQHEGLKHSGIDRPYKCDICLKSFKHLSRLKIHIVSHSNLPPQHSCSICSTKFRHKCNFYAHMRLHSKESADLDSLKRHTKKLHSNTNAFGNIKPPKVEESKLVNVNRLEHDCSETSEYESNMLVDFPEESQQQLPSTPKQQFRNSECSINPQNILKNASNSTSTTESNLIEFVKVEKYQITEQNVEELKTDKPKLSTIYNIEDFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -