Pinf025885.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:166755863-166765264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 1.7e+02 4.3 1.0 9 23 23 37 22 38 0.90 2 17 0.00017 0.015 17.1 1.6 2 23 57 79 56 79 0.97 3 17 0.053 4.6 9.2 0.7 1 20 86 105 86 105 0.96 4 17 0.042 3.6 9.6 2.6 4 23 104 123 104 123 0.91 5 17 5e-05 0.0042 18.8 0.1 1 23 130 152 130 152 0.98 6 17 5.9e-05 0.0051 18.5 0.5 1 23 158 181 158 181 0.98 7 17 9.3 8e+02 2.2 0.3 11 23 218 231 216 231 0.88 8 17 0.0012 0.099 14.5 1.0 2 23 424 445 423 445 0.97 9 17 0.033 2.8 9.9 3.4 1 23 458 481 458 481 0.97 10 17 0.00015 0.013 17.2 3.0 1 20 488 507 488 509 0.95 11 17 0.00026 0.023 16.5 2.5 1 23 520 542 520 542 0.96 12 17 3.5e-05 0.003 19.2 0.4 1 23 549 571 549 571 0.98 13 17 0.0015 0.13 14.1 2.7 2 23 578 600 577 600 0.94 14 17 0.005 0.43 12.5 7.0 1 23 607 629 607 629 0.94 15 17 0.0016 0.14 14.0 2.8 1 23 636 658 636 658 0.98 16 17 0.00032 0.027 16.3 1.6 1 23 664 687 664 687 0.98 17 17 0.00021 0.018 16.8 0.7 1 23 772 794 772 794 0.98
Sequence Information
- Coding Sequence
- ATGGTTGAATTTAAAGGTATTCTTACAACATCTCATAACGAAAAAATTGCAATGACTCTTTTACATgcCTTTGAAAGATATGACTATTTGGCCATCCATATTAAAACACATCATCCAAAAAGTACAACACAGCGATGGACACCCGGCATTAATATTCCCAAGGAAAATCAATGTAATTATTGTGGTAAACAGCTGAAATCATCTGTCACATACACAAgacatataaaaatgtttcatccaACTGAAAAGCTACCTCATAAATGTGAAACATGCAGTAAGGAATATTATACACTAAAGAGTCTATCTCTACATATttgtttcaaaagttttaaacaaTTGGGACATTTAAGACAACATAAAGTGTTGCACTCTAATCTATCACTAAAGTATTCATGTTCTATATGTCCAGCTAAATTTCGACGTAAAGACGGTTTAGACGTTCACATGAGCATTCATTCAAAAGAGAAACCCTTTAAGTGCGGCATATGTTCAGAAGTATTTATCCAGTCAGATTTACTTGAAACACATACTAAGAAATTTCATAGTGATACTACCATATCTGGAAATATTAATCTACTAGAAAAAGATGCAtcagaattaaataaaaaagatcATCGATTAGAAGATTCCCCTCCGTCTTCTAATATTACTAAATTTCAAGATTCACTTGAAAGACATACTAAAAAAACTCACAGCGATTCTATCGCCGCATCTGGAAATACTAAATTAATAGAAATTAATGAACCCGAACTAACTAATAAAGATAATCGATTATCATcttcttttttacacattttgaaTAAAGATATTGTAAAACTTGTCAAAGATAATCAACAAAGTGAAGTTGTGGAACTTACAGAAGATCATCATAAAAAATATTCTTCATCTTCtaataaaaatgttgtaaaacttTCCAAAAATAATCAAGAAGGTGAAGTTGTAGAACTTACAAAAGATCATCATAACAAAGAGCCTTCAACTTCTAATAAAGATGTTGTAAAACTTTCCAAAGATAATCAAGAAAGTGAAGTTGTGAAACTTACagaaaaatatcgtaaaaaagATTCCTCATCTTCTAGTAAAGAAATTTCGTGGGAAGATCATCATAAAAAAGAGTCTTCATCTTCTAATAAAGATGTTGTAAAACTTGCCAAAGATAATCAAGAAAGGGAAGTTGTGGAACTTACAGAAGATGATCATAAAAAAGATTCCTTATCTTCTAATAAAGAAATTTCGTGGGATTCCCAGAAAAATACACCCAAAAGAAATCAATGCGGCTATTGTGGCAAACAATTAAAAACATCACGAACATATAAAATTCATTTACTTAtgcatacaaaaaataaatctCGATGTGAACCTGGTGTTACTTTTCAATGTGACTATTGTGGTAAACAACTGAAATCATCGCTAACACATCAAAGGCATATGCAAATCTTCCACCTAAATAAAAAACAATCTCATAAATGTAAAACATGCAATAAGTCATTTTATACACTTAAAAGTCTAACTCGACACTTAACTGAAACGCTAGCACACTCCGCTAATGATCGACCTCATAAATGTgatatttgtttaaaaagttttaaacaatTGGCAACTTTAAACCGACATAAAGTATCGCACTCTGAACTACAACCACAGTATTCGTGTTCGATATGTCCAGCCAAATATCGACGCAAAGACAATTTAGGGGTACACATGTACACTCATACAAATGAGGAACTCTTGAAATGCAAAACATgcaataagaaattttctacacGTAGGAGACTAATTCAACATGAAAGCAAACCACACTCCGATAATAATAGTCCTCATAAATGTGATATttgtttcaaaagttttaaacacTTGGTACATTTAAGACAACATAAAGTGTTGCACTCTAATCTATCACTAAAGTATTCATGTTCGATATGTCCAGCTAAATTTCGGCACAAAGACTGTTTAGATGTTCACACAAACATTCATTTAAAAGAGATACCATTTAAATGCGGCATATGTGCAGAAGTATTTATCCACTCAGATTTACTTAAAACACATACTAAGAAATATCACAGTGATACTACAACATCTGGAAATATTAATCTACTAGAGAAAGATAAATCAGAATTAATtaataaagataatcaaattgaAGATTCTCATCCATCTTCTAATTTTCACATTTCGACTAAAGATGTTGTAAAACTTGCCAAGGATAATCAGGAAAGTGAAAGTGTGGAACTAACAGGTGatcatcataaaaaacattatacATCTTCGAATAAAGAAATTTTGTGGAACTCACAGAAAATCAAACCCAAAAGACATCAATGTGGTTATTGTGGCAAACAATTAGAAACATCAGCGACACTTAAAATTCATTTACTCATGCATACAAAAAATGAATCTCACTGGACTCCTGGAGTTAATATTGCCGAGGAAAATCAATGTGATTATTGTGCTATTGTTAAACTGTCCAAAGATGATTGTGTTGATTTTCCTGAAGAAAGCCAACAGCAATTGTCTTCAACATCTAAAACACAAATTAGGAATACTAAATGCTTTAGAAGTCCACAAAATATTGTAAATGAGAATTCCAAAGCTATATCGGATTCATTGCCCATGGAAAATATACTTACTGATGATTCGAATTCTTCTACATCGACTACTGAATCAAATTTCATTGAATTTATCAAATTAGAGGAATATCAGATAATAGAGCAAAATGTTGAATAA
- Protein Sequence
- MVEFKGILTTSHNEKIAMTLLHAFERYDYLAIHIKTHHPKSTTQRWTPGINIPKENQCNYCGKQLKSSVTYTRHIKMFHPTEKLPHKCETCSKEYYTLKSLSLHICFKSFKQLGHLRQHKVLHSNLSLKYSCSICPAKFRRKDGLDVHMSIHSKEKPFKCGICSEVFIQSDLLETHTKKFHSDTTISGNINLLEKDASELNKKDHRLEDSPPSSNITKFQDSLERHTKKTHSDSIAASGNTKLIEINEPELTNKDNRLSSSFLHILNKDIVKLVKDNQQSEVVELTEDHHKKYSSSSNKNVVKLSKNNQEGEVVELTKDHHNKEPSTSNKDVVKLSKDNQESEVVKLTEKYRKKDSSSSSKEISWEDHHKKESSSSNKDVVKLAKDNQEREVVELTEDDHKKDSLSSNKEISWDSQKNTPKRNQCGYCGKQLKTSRTYKIHLLMHTKNKSRCEPGVTFQCDYCGKQLKSSLTHQRHMQIFHLNKKQSHKCKTCNKSFYTLKSLTRHLTETLAHSANDRPHKCDICLKSFKQLATLNRHKVSHSELQPQYSCSICPAKYRRKDNLGVHMYTHTNEELLKCKTCNKKFSTRRRLIQHESKPHSDNNSPHKCDICFKSFKHLVHLRQHKVLHSNLSLKYSCSICPAKFRHKDCLDVHTNIHLKEIPFKCGICAEVFIHSDLLKTHTKKYHSDTTTSGNINLLEKDKSELINKDNQIEDSHPSSNFHISTKDVVKLAKDNQESESVELTGDHHKKHYTSSNKEILWNSQKIKPKRHQCGYCGKQLETSATLKIHLLMHTKNESHWTPGVNIAEENQCDYCAIVKLSKDDCVDFPEESQQQLSSTSKTQIRNTKCFRSPQNIVNENSKAISDSLPMENILTDDSNSSTSTTESNFIEFIKLEEYQIIEQNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -