Pinf025950.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pegoplata infirma
Gene Symbol
-
Assembly
GCA_963921195.1
Location
OY992538.1:167455358-167459838[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00069 0.059 15.2 1.4 1 23 93 116 93 116 0.97
2 21 0.14 12 7.9 0.5 2 15 184 197 183 203 0.83
3 21 0.0026 0.23 13.4 2.5 1 23 222 245 222 245 0.97
4 21 0.0015 0.13 14.1 0.9 2 23 253 275 252 275 0.89
5 21 0.025 2.1 10.3 5.2 1 23 282 304 282 304 0.96
6 21 0.00035 0.03 16.1 1.6 3 23 313 333 311 333 0.96
7 21 0.0067 0.57 12.1 0.5 2 23 348 370 347 370 0.97
8 21 1.8e-05 0.0016 20.1 1.8 1 23 394 416 394 416 0.96
9 21 2.4e-06 0.00021 22.9 0.5 1 23 423 446 423 446 0.97
10 21 0.014 1.2 11.1 1.0 2 23 530 552 529 552 0.94
11 21 0.0062 0.53 12.2 0.8 2 23 570 592 569 592 0.96
12 21 0.055 4.7 9.2 1.4 1 23 599 622 599 622 0.91
13 21 0.028 2.4 10.1 4.0 1 23 629 651 629 651 0.93
14 21 0.00021 0.018 16.8 1.2 1 23 658 680 658 680 0.97
15 21 4 3.4e+02 3.3 1.5 1 23 686 709 686 709 0.91
16 21 0.0011 0.097 14.5 1.1 2 23 786 808 785 808 0.96
17 21 0.026 2.2 10.2 1.0 2 23 828 850 827 850 0.96
18 21 0.13 11 8.1 2.3 1 23 857 880 857 880 0.92
19 21 0.032 2.7 9.9 3.2 1 23 887 909 887 909 0.93
20 21 0.0001 0.0085 17.8 0.8 1 23 913 935 913 935 0.97
21 21 4 3.4e+02 3.3 1.5 1 23 941 964 941 964 0.91

Sequence Information

Coding Sequence
ATGATAGTAAGCAGAGACATGACACCATATCTCAATGCTCACTTAAGAGTAAATGACACATTAATAGAACGAGTAAACAGATTTAAATATTTGGGTGCTTGGCTCACTAAAGACTGttttaaaAGACATGCCTATTTGGACAACCATGTTAAAAGACATCATCCAGAAAATAACATACATCAACAATACACTACAACTGCGCGATGTACACCCGGCGTTAATATTCCCGAGGAAAATCAATCTGATCTTGTTTCAAAagtaaaacaagaaaaaacatttaCATGTGGCTTATGTTCTGAAGAATTTTTCCACCCAGATTCACTTGAAAGACACACTAAAAAGATTCACAGTGCATATTCTGTTAATATTAATCCACTAGGAAAAGCTGAATCAGAATTAATTAATGAAGATGACCGATTAAAAGATTCGCCTGCATCTAATCCAGAAAACGATGTTAAGGAACTTGCAGAAGATGATCATAAAATATATTACAAATCTTCTAATGAAGAAATTTCGTGGGATTCCCAGAAAAACACACCCAAACAAAATCAATGTGGGTATTGTGGCAAACAATTTAATACTTCGCAAGCACATAAAATTCATGTATattgtcatttaaaaaataaactacaatgGACACCCGGAGTTAATATTCCCAAGAAACATCAATGTGATTATTGTGGAAAACAATTGACAAAATCTTTATTATATCAAAGACATTTACTAACCATGCATCCAAATGAAAAACCACCTCTTAAGTGTAAAACATGCAATGAGAGATTTTATACACTTAAGAGTCTAACACGACATGGAATCCTTATACACTCCGGCAGTGATAGACCTCATAAATGTgatatttgtttaaaaagttttaaacatttttcaactttagGACAACATAAACTGTTGCACTCTGACCTAAAACCACAGCATTTATGTTCGATATGTCCAGCTAAATTTCGAACTAAACGAAAATTAGACGTTCACATGCGCATTCATTCACAGCAATGGACACCCGGAATTAATATTCCCAAGGAAAACCAATGTTATTATTGTGGTATACAACTGACATCATATTCAACATTTCAAAGTCATATACAAAGTATTCATCCAAACGAAAAACTACCTCATCAATATAATTCAGATAACAGTCAACAAGACTCCGGTAATGATAAGCCTTATAGATGTgatatttgtttaaaaagttttaaacacTTGTCACTTTTAACACGACATATAGTGTTGCATTCTGATCTTCCACCAGAGTATTCTTGTTCGATATGTCCAGTTGAATTTCGAAATAAAGATTCACTGAAAAGACATATTAAGTCATTGCACAGCGATACGATTAACCCACTCGAAAAAGATGAATCTGAATTAATGTATAAAGATGATGATCAATTAGAAAATTTCCCCACATCTTCTAATATGCCTATTGCGGATAAAGATGTTGTTAAACATACCGGAGACAATCAAGAAAGTGAAGTTGAAGAACTTACAGGAGATGATCATAAAATATACTCGTATACCTCATCTTCTAATAAAGAAACTTCGAGGGATTCCCAGAAAAATACACCCGCAAAAATTCAATGTGGGTATtgtgacaaaaaattaaaaacaatgcgAACATATAACAAACATTTAAGTCTTATTCATACAAATATTAAACCTCAGTGGACACCTGGAGTTAATATTCCCGAGAAAAATCAATGTGATTATTGTGGTAAACAATTGAAATCTTATGTAGCATATCATAGACATATAGAAAGCATTCATCCAAATATAAAACCATCTTATAAATGTAAAACATGCAGTAAGGAATATTATACACTTAAGGGTCTAACTGGGCATGAAATCCAAAAACACTCCGTTTATGAAAGACCTCATAAATGCGATATTTGTTTGAAAACTTTTGTATTATTTTCACATTTAACAACTCATAAAGTATTGCACTCTAAACTACCATCACAGCATTCTTGTTCGATATGTCCAGCTAAATTTCCACGTAAATTCAGTTTAGACGTTCACATGCGCAATCATACAAAAGAGAAACCATTCAAATGTGTCCCATGTTCAGTAGAATATGTCCACCTAGATACACTTAAAAGACATAATGAAAAATTTCACAGCAATACTAGTACATCTggaaatatttattcactaaaAAAAGgtaaatcagaattaaaaaataaatatgatcgATTAGAAGATTTGCCCTCATCGTCTAATATCCATGTTTCGAATAAATTTGTTGTTAAACTTATTGAAGATAATCAAGAAAGTGAAGATGTGGAACTTACAGGAGATGATGAAGAAATTTCGCGGGATTCCCAGAAAAATACACCCGCAAAAATTCAATGTGGGTATtgtgacaaaaaattaaaaacattgcgAACATATAACAAACATTTACGTCTTATTCATACAAATAAGAGTATAAAACCTCAATGGACACCTGGAGTTAATATTCCCGTTAAAAATCAATGTGATTATTGTGGTAAACAATTAAAATCTTATTTAGCATATCATAGACATATAGAAAGCATTCATCCAAATATAAAACCACCTTATAAATGTAAATCATGCAGTAAGGAATATTATACACTTAAGAGTCTAACTGGACACGAAAGCCAACGACACCCCGTTCATGAAAGACCTCATAAATGTGATATTTGTTTGAAAACGTTTATACTATTAACACATTTAACAAATCATAAAGTATTGCACTCTAAACAGCATTCTTGTTCGATATGTCCAGCTAAATTTCCACGTAAATTCAGTTTAGACGTTCACATGCGCATTCATACAAAAGAGAAGCCATTTAAATGTGTCCCATGTTCAGTAGAATATGTCCACCTAGATACACTTAAAAGACATAATGAAAAATTTCACAGCAATACTACCACATCTGGGAATATTTATTCACTACAAAAAGTTAAATCAGAATTAAGATATAAAGATAATCGATTAGAAGAAGATTCCCCCTCATCTTCTAATATCCACATTTCAAATAAATTTCTTGTTAAACATGACGAAGATGATTTTATTGGTTTTCCTGAAGAAAGTCAACAACAATTAACTTCCACATCTAAAACACAACTTGGGAATACTGAATGCAATACGATTCCACAAGATGTTAATGAGAATTCCAAAGCTATATCGTTGCCCATGGATGCTTCGAATTTCACATCAACTACCGAATCAAGTTTAATTGAATTTATCAAAGTAGAGGAATATCAAATAATGGAACAAAATGTTGAAGAACTAAAAACTGACATGGCTGAACTTAGTAGCGTTTATAGTATAGAAGATTTAATATAA
Protein Sequence
MIVSRDMTPYLNAHLRVNDTLIERVNRFKYLGAWLTKDCFKRHAYLDNHVKRHHPENNIHQQYTTTARCTPGVNIPEENQSDLVSKVKQEKTFTCGLCSEEFFHPDSLERHTKKIHSAYSVNINPLGKAESELINEDDRLKDSPASNPENDVKELAEDDHKIYYKSSNEEISWDSQKNTPKQNQCGYCGKQFNTSQAHKIHVYCHLKNKLQWTPGVNIPKKHQCDYCGKQLTKSLLYQRHLLTMHPNEKPPLKCKTCNERFYTLKSLTRHGILIHSGSDRPHKCDICLKSFKHFSTLGQHKLLHSDLKPQHLCSICPAKFRTKRKLDVHMRIHSQQWTPGINIPKENQCYYCGIQLTSYSTFQSHIQSIHPNEKLPHQYNSDNSQQDSGNDKPYRCDICLKSFKHLSLLTRHIVLHSDLPPEYSCSICPVEFRNKDSLKRHIKSLHSDTINPLEKDESELMYKDDDQLENFPTSSNMPIADKDVVKHTGDNQESEVEELTGDDHKIYSYTSSSNKETSRDSQKNTPAKIQCGYCDKKLKTMRTYNKHLSLIHTNIKPQWTPGVNIPEKNQCDYCGKQLKSYVAYHRHIESIHPNIKPSYKCKTCSKEYYTLKGLTGHEIQKHSVYERPHKCDICLKTFVLFSHLTTHKVLHSKLPSQHSCSICPAKFPRKFSLDVHMRNHTKEKPFKCVPCSVEYVHLDTLKRHNEKFHSNTSTSGNIYSLKKGKSELKNKYDRLEDLPSSSNIHVSNKFVVKLIEDNQESEDVELTGDDEEISRDSQKNTPAKIQCGYCDKKLKTLRTYNKHLRLIHTNKSIKPQWTPGVNIPVKNQCDYCGKQLKSYLAYHRHIESIHPNIKPPYKCKSCSKEYYTLKSLTGHESQRHPVHERPHKCDICLKTFILLTHLTNHKVLHSKQHSCSICPAKFPRKFSLDVHMRIHTKEKPFKCVPCSVEYVHLDTLKRHNEKFHSNTTTSGNIYSLQKVKSELRYKDNRLEEDSPSSSNIHISNKFLVKHDEDDFIGFPEESQQQLTSTSKTQLGNTECNTIPQDVNENSKAISLPMDASNFTSTTESSLIEFIKVEEYQIMEQNVEELKTDMAELSSVYSIEDLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-